Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   D0T92_RS07000 Genome accession   NZ_CP031700
Coordinates   1515451..1517205 (-) Length   584 a.a.
NCBI ID   WP_151051481.1    Uniprot ID   A0A5J6Q062
Organism   Neisseria zalophi strain ATCC BAA-2455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1510451..1522205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0T92_RS06970 (D0T92_07020) - 1510585..1510857 (-) 273 WP_151051469.1 DUF3079 domain-containing protein -
  D0T92_RS06975 (D0T92_07025) - 1511128..1511490 (-) 363 WP_151051471.1 hypothetical protein -
  D0T92_RS06980 (D0T92_07030) - 1511693..1512061 (-) 369 WP_151051473.1 hypothetical protein -
  D0T92_RS06985 (D0T92_07035) ybaK 1512572..1513057 (-) 486 WP_151051475.1 Cys-tRNA(Pro) deacylase -
  D0T92_RS06990 (D0T92_07040) - 1513179..1513538 (+) 360 WP_151051477.1 RidA family protein -
  D0T92_RS06995 (D0T92_07045) recN 1513754..1515421 (+) 1668 WP_151051479.1 DNA repair protein RecN -
  D0T92_RS07000 (D0T92_07050) recD 1515451..1517205 (-) 1755 WP_151051481.1 exodeoxyribonuclease V subunit alpha Machinery gene
  D0T92_RS07005 (D0T92_07055) - 1517433..1518629 (+) 1197 WP_151051483.1 amino acid aminotransferase -
  D0T92_RS07010 (D0T92_07060) - 1518790..1519311 (+) 522 WP_151051485.1 RDD family protein -
  D0T92_RS07015 (D0T92_07065) - 1519438..1520895 (+) 1458 WP_151051487.1 efflux transporter outer membrane subunit -
  D0T92_RS07020 (D0T92_07070) - 1521061..1521930 (-) 870 WP_151051489.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 63836.85 Da        Isoelectric Point: 5.8357

>NTDB_id=310555 D0T92_RS07000 WP_151051481.1 1515451..1517205(-) (recD) [Neisseria zalophi strain ATCC BAA-2455]
MQPAPVADLNQAAAEAAVEVLQRHAPQEAEAVAAYVYRLFAALQEGHAFLWLDDDEADTLRKLETIVSDKGNTPLILMGK
KLFLGRIWQLEHDVATEIVRLTGAPVSGIDGQAAAEYLQTWFAGKGSEGQRDAAALALLEPFMLISGGPGTGKTTTVAKL
LGLLCSGRQALPRIALAAPTGKAAAHMARALHRAVGTFTLPEPIRNHLLQLDGQTVHRLLKLRPPEMMPSFHAEYPLPLD
ILVVDEASMLDISLLLQLLRAIPTGCRLVLLGDENQLPSVGAGAVLAQLAQTTVLDNDTAAKLAALLPQHGLATADQPPP
LAQNIARLQVSHRFGDDSGIGALARAVIKGESGEAWAQFDHFPNELHLNAGSLKQQAERFYGRQADYWRAVDAGDIAAAF
EHQTDIMVLAARRYDAEAFNEAYRYCLQRHGRARADMPWFAGQVVMVSRNDYTLDVFNGDIGLIMPDTDKAEETALAAYF
PSPEGYRKIALSRLPEHETAFAITVHKSQGSEYREVWLLPPTEEENEPTHGLNKALLYTAITRAREQFVFWGSKTAFQTA
CSLDEKRRSALREMIGQVMGQTKL

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=310555 D0T92_RS07000 WP_151051481.1 1515451..1517205(-) (recD) [Neisseria zalophi strain ATCC BAA-2455]
ATGCAGCCAGCTCCCGTTGCAGATTTAAATCAGGCCGCCGCCGAAGCCGCGGTTGAGGTATTACAACGCCATGCACCGCA
AGAGGCGGAAGCTGTTGCGGCTTATGTTTACCGCCTGTTTGCCGCCTTGCAGGAAGGGCATGCTTTTTTATGGCTGGATG
ACGACGAAGCCGACACCCTGCGCAAACTGGAAACCATTGTCAGCGATAAAGGCAATACGCCGCTTATCCTGATGGGCAAA
AAACTTTTTCTCGGCCGTATTTGGCAATTGGAGCATGATGTCGCTACTGAAATCGTACGCTTGACCGGTGCGCCTGTAAG
TGGAATAGACGGGCAGGCGGCAGCCGAATATTTGCAAACTTGGTTTGCCGGCAAAGGCAGCGAAGGGCAGCGGGATGCGG
CGGCATTGGCATTATTGGAACCGTTTATGCTGATTAGCGGCGGGCCGGGTACGGGCAAAACCACAACCGTAGCCAAATTG
CTCGGCTTATTGTGCAGCGGCCGCCAAGCCTTGCCCCGTATTGCTTTGGCCGCGCCCACAGGGAAAGCTGCCGCCCATAT
GGCGCGTGCACTTCATCGCGCCGTCGGCACCTTTACCTTACCGGAACCCATACGCAACCATTTATTGCAGCTCGACGGGC
AGACCGTTCACCGTTTGCTGAAATTGCGTCCGCCGGAAATGATGCCCTCGTTTCATGCCGAATATCCGCTGCCGTTGGAT
ATTTTGGTGGTGGACGAAGCCTCTATGTTGGATATTTCGTTGTTATTACAATTATTGCGCGCCATTCCCACAGGCTGCCG
CTTGGTTTTGTTGGGTGATGAAAACCAACTGCCTTCGGTCGGTGCCGGTGCGGTTTTGGCGCAGTTGGCGCAAACAACGG
TTTTAGATAACGATACGGCGGCAAAACTGGCTGCTTTATTGCCGCAACACGGATTGGCTACCGCCGACCAACCGCCGCCG
TTGGCTCAAAATATCGCCCGTTTGCAAGTCAGCCATCGTTTCGGTGACGACAGCGGTATCGGCGCTTTGGCGCGTGCGGT
TATTAAGGGCGAGTCAGGCGAAGCTTGGGCACAATTTGATCATTTTCCAAACGAACTGCATTTGAATGCAGGCAGCTTAA
AGCAGCAGGCGGAAAGGTTTTATGGCAGGCAGGCAGACTACTGGCGGGCGGTAGATGCGGGCGATATTGCGGCGGCATTC
GAGCACCAAACCGATATTATGGTGTTGGCCGCGCGCCGGTATGATGCGGAAGCCTTTAACGAAGCCTACCGCTATTGCTT
ACAACGACACGGACGCGCCCGCGCCGATATGCCGTGGTTTGCCGGGCAGGTGGTTATGGTGTCGCGCAATGACTATACCT
TGGATGTGTTTAACGGCGATATCGGCCTGATTATGCCGGATACGGATAAAGCGGAAGAAACCGCGCTGGCGGCATATTTC
CCATCGCCGGAAGGCTATCGGAAAATCGCACTCAGCCGCCTGCCCGAACATGAAACCGCTTTTGCGATTACCGTACACAA
AAGCCAAGGTTCGGAATACCGTGAAGTATGGCTGTTGCCGCCGACCGAAGAAGAAAACGAACCGACACATGGCTTAAACA
AGGCTTTACTCTATACCGCGATAACCCGCGCCCGCGAGCAATTTGTTTTCTGGGGCAGCAAAACGGCTTTTCAGACGGCC
TGTTCCTTAGATGAAAAGCGTCGCAGTGCATTGCGTGAAATGATAGGGCAGGTAATGGGGCAAACCAAGCTATAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(500-547)

AAA domain (AAA_30)

(127-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6Q062

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

56.338

97.26

0.548

Multiple sequence alignment