Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   D0T92_RS02590 Genome accession   NZ_CP031700
Coordinates   571921..575154 (+) Length   1077 a.a.
NCBI ID   WP_151049949.1    Uniprot ID   A0A5J6Q2C9
Organism   Neisseria zalophi strain ATCC BAA-2455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 566921..580154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0T92_RS02575 (D0T92_02610) - 567798..568664 (+) 867 WP_151049945.1 ATP-binding protein -
  D0T92_RS02580 (D0T92_02615) - 568771..570564 (-) 1794 WP_151052943.1 bifunctional chorismate-binding protein/class IV aminotransferase -
  D0T92_RS02585 (D0T92_02620) ppk2 570728..571669 (+) 942 WP_151049947.1 polyphosphate kinase 2 -
  D0T92_RS02590 (D0T92_02625) recC 571921..575154 (+) 3234 WP_151049949.1 exodeoxyribonuclease V subunit gamma Machinery gene
  D0T92_RS02595 (D0T92_02630) - 575552..576943 (+) 1392 WP_151049951.1 DEAD/DEAH box helicase -
  D0T92_RS02600 (D0T92_02635) porB 577556..578665 (+) 1110 WP_151049953.1 trimeric porin PorB -
  D0T92_RS02605 (D0T92_02640) rpsL 578893..579264 (+) 372 WP_002242163.1 30S ribosomal protein S12 -
  D0T92_RS02610 (D0T92_02645) rpsG 579382..579852 (+) 471 WP_151049955.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 1077 a.a.        Molecular weight: 123042.32 Da        Isoelectric Point: 4.8301

>NTDB_id=310542 D0T92_RS02590 WP_151049949.1 571921..575154(+) (recC) [Neisseria zalophi strain ATCC BAA-2455]
MLYLYQSNRLEDLAALFARLHQLQPPANPFAAEEIIVQSQGMRRYLNSYLAKETGIAANLNFNLPGRLTWQLMRDMIADV
PMLSPFDPEVIRWRLLSLFQSSDFQTASEYAPVREALQSYLYSGATADYQMAGQLADIFDQYLVYRPQWIDAWQQGKTVG
LGEDEHWQALLWRYLDDGKQSTPHRVALWRQLLGALDKNKLPERYCVFGIATMAPVYLELLQALAEHCDVHIFALNPSSE
YWGNVIEAAQVLQQEDDIDLSQTGHPLLASLGKQGRDFFDALVDVPKHEIQVFEEEPFQTDPQTLLHRLQYDIQTLNMPS
ENPHHLTQPDLNDGSITVVSAHSPLRELQILKDRLLTVLAEHPDWQPHDIAVLTPHIEPYSPFIEAVFGQAQAGSQALPY
SVSDVKISRRQPLFQALAQVLVLLESRFEVDLLLPLLENELVRRRFGLNRDDLPLLHDTIAKLSIHWGLDENMRGSNNLF
TWQQGLERLALGWMLPESMHALWHKISAWHGNPGQTEVYSRFAALVRTLAETARIWRKPVSIPEWVERIRTLMTALTEPD
SEDQHAWQQLSQALARWQEEAELAGFEAVLSQPSVIRHISRFLDSESQAGFLRGGITFCSMVPMRSLPFKMICLLGLNDG
DFPRNTKAAAFDLIAQYPQKGDRARRDDDRYLFLEAVMSAREILYLSYVGRDIRNDQELAPSALLNELMDTLAAMTGKTT
AELHQNWVVQHPLQAFSPRYFTPKSRSDGLFGTRQDYAGALNMPAEEATEFFSEPLSDGVAAENAIRHYDFIRFWQNPVR
YWLQNTLSWQEPYRDQAWDAAEPFEPHQTERIIAEYTAARRHNESFEQTAERLQAQSLMPTGVLGSLWQTYFQTAAKTLD
STLVSSPKLPTIAYTLFDTPYMLEGSLNHLYQHGQIYFLEQPPNSPRRLAILLEHLIFCAVRPSETETYQTHLLLPNEPE
TFAEIPQSEAQALLQKWLAFYAVGQSRPLPFFARTSLEVAKKMHNGEDETQAMSTASNAYYGNKVSKGQKDYTEVALVFG
NSETPPIESPLFWNMIQELLVPLLNAAMQKPEEEESE

Nucleotide


Download         Length: 3234 bp        

>NTDB_id=310542 D0T92_RS02590 WP_151049949.1 571921..575154(+) (recC) [Neisseria zalophi strain ATCC BAA-2455]
ATGCTTTACCTCTATCAGTCGAACCGACTTGAAGATCTGGCTGCATTATTCGCCCGTCTCCATCAGCTCCAACCGCCTGC
CAATCCGTTTGCAGCAGAAGAAATTATTGTGCAAAGCCAAGGTATGCGGCGTTATTTGAACAGCTATTTGGCGAAAGAAA
CCGGCATTGCCGCCAATCTGAATTTCAATTTGCCCGGTCGGCTGACATGGCAATTGATGCGTGACATGATTGCCGATGTG
CCTATGCTCAGTCCGTTCGATCCCGAAGTGATACGCTGGCGTTTATTGTCGCTGTTTCAAAGTTCGGATTTTCAGACGGC
CTCCGAATATGCCCCCGTGCGCGAAGCCTTGCAAAGCTATTTATATAGCGGGGCGACGGCAGATTATCAGATGGCCGGTC
AGCTGGCGGATATTTTCGACCAATATTTGGTTTACCGCCCGCAGTGGATAGATGCTTGGCAGCAGGGGAAAACGGTTGGC
TTAGGGGAAGATGAACACTGGCAGGCGCTGTTGTGGCGGTATTTGGACGACGGCAAACAATCCACTCCGCACCGTGTTGC
TTTATGGCGGCAACTCTTAGGGGCGTTAGATAAAAACAAACTGCCCGAACGTTATTGTGTGTTTGGTATTGCCACGATGG
CACCGGTTTATCTGGAATTGTTGCAGGCATTGGCGGAGCATTGCGATGTACACATTTTCGCCCTGAATCCCAGTAGCGAA
TATTGGGGCAATGTGATTGAAGCCGCCCAAGTTTTACAGCAGGAAGACGATATCGACCTGAGTCAGACAGGCCACCCGCT
TTTGGCTTCATTGGGCAAACAGGGGCGGGATTTTTTCGATGCCTTAGTCGATGTACCCAAACATGAGATTCAGGTTTTTG
AAGAAGAACCTTTTCAGACGGACCCTCAAACTTTATTGCACCGCTTGCAATACGATATTCAAACTTTGAATATGCCGTCT
GAAAACCCACATCACCTAACGCAGCCGGATTTAAATGACGGTTCGATAACGGTCGTTTCTGCGCACAGTCCTTTGCGCGA
ATTACAAATTTTAAAAGACCGCCTGCTCACCGTATTGGCCGAACATCCCGATTGGCAGCCGCACGATATTGCCGTACTCA
CACCCCATATCGAACCGTACAGCCCGTTTATCGAAGCCGTATTCGGGCAGGCGCAGGCAGGTTCGCAGGCATTGCCGTAT
TCGGTATCCGATGTCAAAATCAGCCGCCGCCAGCCCCTGTTTCAGGCCTTGGCGCAAGTGTTGGTATTGCTGGAAAGCCG
TTTCGAAGTGGATTTATTGTTGCCATTGTTGGAAAACGAATTGGTGCGCCGCCGCTTCGGTTTAAACCGCGATGATTTGC
CGCTATTGCACGACACTATTGCCAAACTCAGTATCCATTGGGGTTTGGATGAAAATATGCGCGGCAGTAATAATCTGTTT
ACTTGGCAGCAGGGTTTGGAGCGTCTTGCGCTCGGTTGGATGCTGCCCGAAAGTATGCATGCCTTATGGCACAAAATCAG
CGCATGGCACGGTAATCCGGGGCAAACGGAAGTTTACAGCCGTTTTGCCGCATTGGTTCGCACCCTTGCAGAAACTGCCC
GTATATGGCGCAAGCCCGTTAGTATTCCTGAATGGGTAGAGCGTATCCGCACCTTAATGACCGCATTAACCGAGCCGGAT
AGCGAAGACCAACACGCATGGCAACAGTTGAGTCAGGCATTGGCTCGCTGGCAGGAAGAAGCCGAATTGGCCGGATTTGA
GGCGGTTTTATCGCAGCCGTCCGTTATTCGTCATATCAGCCGTTTTCTCGATAGTGAAAGTCAGGCCGGTTTCTTACGCG
GCGGTATTACCTTTTGCAGCATGGTGCCGATGCGCAGCTTGCCATTTAAAATGATTTGCCTGCTGGGGCTGAATGACGGT
GATTTTCCACGTAATACCAAAGCCGCCGCTTTCGACTTAATCGCCCAATACCCGCAAAAAGGCGACCGCGCCCGCCGCGA
CGACGACCGTTATCTATTTTTAGAAGCCGTGATGAGTGCGCGCGAAATTCTTTATTTGTCGTATGTCGGCCGCGATATCC
GCAATGATCAAGAGTTGGCACCTTCGGCATTACTCAATGAGTTAATGGATACCCTCGCAGCGATGACCGGAAAAACCACA
GCCGAATTGCATCAAAACTGGGTTGTTCAACATCCCTTGCAAGCCTTTTCACCCCGTTATTTCACGCCTAAATCACGTTC
AGACGGCCTATTCGGTACACGGCAGGATTATGCAGGCGCTTTAAATATGCCGGCAGAAGAGGCCACTGAATTTTTTAGTG
AGCCGTTATCTGATGGAGTGGCCGCAGAAAACGCCATCCGGCATTATGACTTTATCCGCTTTTGGCAAAACCCCGTACGT
TATTGGTTGCAAAATACCTTAAGCTGGCAGGAACCATACCGCGATCAGGCATGGGATGCCGCCGAACCGTTTGAGCCGCA
TCAAACCGAACGTATTATTGCCGAATATACTGCCGCCCGCCGTCATAACGAAAGTTTCGAACAGACCGCCGAGCGTTTGC
AGGCACAAAGCTTAATGCCTACAGGCGTACTCGGTTCGCTATGGCAAACGTATTTTCAGACGGCCGCAAAAACACTCGAC
AGTACCCTAGTATCCAGCCCTAAACTGCCGACCATAGCCTATACGCTTTTCGATACGCCTTATATGCTTGAAGGCAGCCT
TAATCATCTTTATCAACACGGGCAGATTTATTTTCTCGAACAACCGCCTAATTCGCCCCGTCGGCTGGCCATATTATTGG
AGCACCTGATATTTTGTGCCGTGAGGCCGTCTGAAACCGAAACCTATCAAACCCATCTGTTATTGCCTAACGAACCGGAA
ACTTTTGCCGAAATTCCACAATCCGAAGCACAGGCATTATTGCAAAAATGGCTGGCGTTTTATGCCGTCGGGCAAAGTCG
GCCGTTACCGTTTTTTGCTCGAACATCATTAGAGGTGGCTAAAAAAATGCACAATGGCGAGGATGAAACCCAAGCAATGA
GTACGGCTTCCAATGCTTATTACGGTAATAAAGTCAGCAAAGGGCAGAAAGACTATACCGAAGTGGCGCTGGTGTTCGGC
AATAGTGAAACGCCGCCGATTGAGTCGCCTTTATTCTGGAATATGATTCAAGAACTGCTTGTTCCTTTATTGAATGCCGC
CATGCAGAAGCCTGAAGAGGAAGAGAGCGAATAG

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(786-1002)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6Q2C9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

61.789

99.629

0.616

Multiple sequence alignment