Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   E4K03_RS05560 Genome accession   NZ_CP038262
Coordinates   1130790..1131152 (+) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain LEV1449/17Ec     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1125790..1136152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4K03_RS05545 (E4K03_05545) - 1128284..1129402 (-) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -
  E4K03_RS05550 (E4K03_05550) - 1129462..1130100 (-) 639 WP_002027721.1 hypothetical protein -
  E4K03_RS05555 (E4K03_05555) pilG 1130383..1130766 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  E4K03_RS05560 (E4K03_05560) pilH 1130790..1131152 (+) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  E4K03_RS05565 (E4K03_05565) - 1131213..1131749 (+) 537 WP_109267471.1 chemotaxis protein CheW -
  E4K03_RS05570 (E4K03_05570) - 1131796..1133874 (+) 2079 WP_000505927.1 methyl-accepting chemotaxis protein -
  E4K03_RS05575 (E4K03_05575) - 1133977..1134897 (+) 921 Protein_1064 response regulator -
  E4K03_RS05580 (E4K03_05580) - 1134894..1135358 (+) 465 WP_000678923.1 hypothetical protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=310523 E4K03_RS05560 WP_000101096.1 1130790..1131152(+) (pilH) [Acinetobacter baumannii strain LEV1449/17Ec]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=310523 E4K03_RS05560 WP_000101096.1 1130790..1131152(+) (pilH) [Acinetobacter baumannii strain LEV1449/17Ec]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACCTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment