Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   D0T90_RS04705 Genome accession   NZ_CP031699
Coordinates   1021972..1022259 (+) Length   95 a.a.
NCBI ID   WP_126325826.1    Uniprot ID   A0A5P3MS29
Organism   Neisseria animalis strain ATCC 49930     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1016972..1027259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0T90_RS04705 (D0T90_04880) comE 1021972..1022259 (+) 288 WP_126325826.1 helix-hairpin-helix domain-containing protein Machinery gene
  D0T90_RS04710 (D0T90_04885) - 1022496..1023917 (-) 1422 WP_123796369.1 OmpP1/FadL family transporter -
  D0T90_RS04715 (D0T90_04890) dprA 1024189..1025421 (+) 1233 WP_123796368.1 DNA-processing protein DprA Machinery gene
  D0T90_RS04720 (D0T90_04895) - 1025484..1025939 (+) 456 WP_123796367.1 DUF494 family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9807.51 Da        Isoelectric Point: 10.7076

>NTDB_id=310510 D0T90_RS04705 WP_126325826.1 1021972..1022259(+) (comE) [Neisseria animalis strain ATCC 49930]
MKKFLFGALAALAAGLSLAAVNINTAAQSELEALPGIGPAKAKAIVAYRQQNGGFKTTEELKNVKGIGEGIYGKLKAEVT
VAPVQNKRKAVPASK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=310510 D0T90_RS04705 WP_126325826.1 1021972..1022259(+) (comE) [Neisseria animalis strain ATCC 49930]
ATGAAAAAATTCCTGTTCGGTGCGCTGGCTGCGTTGGCGGCAGGCTTGTCGTTGGCGGCGGTAAACATCAATACGGCCGC
TCAGAGCGAGTTGGAGGCCCTGCCGGGCATCGGCCCTGCGAAAGCCAAAGCGATTGTGGCCTACCGTCAGCAGAACGGCG
GTTTCAAAACGACGGAAGAGCTGAAGAATGTGAAGGGTATCGGTGAGGGAATTTATGGCAAACTGAAGGCCGAGGTCACG
GTGGCGCCGGTACAGAACAAACGTAAGGCCGTGCCGGCTAGCAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P3MS29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

52.041

100

0.537
  comE Neisseria gonorrhoeae MS11

52.041

100

0.537
  comE Neisseria gonorrhoeae MS11

52.041

100

0.537
  comE Neisseria gonorrhoeae MS11

52.041

100

0.537
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.602

87.368

0.442
  comEA Vibrio parahaemolyticus RIMD 2210633

44.444

85.263

0.379

Multiple sequence alignment