Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   D0T90_RS02225 Genome accession   NZ_CP031699
Coordinates   512263..515505 (-) Length   1080 a.a.
NCBI ID   WP_123794734.1    Uniprot ID   A0A5P3MVY9
Organism   Neisseria animalis strain ATCC 49930     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 507263..520505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0T90_RS02210 (D0T90_02295) recG 508239..510278 (-) 2040 WP_123794640.1 ATP-dependent DNA helicase RecG Machinery gene
  D0T90_RS02215 (D0T90_02300) - 510451..511497 (+) 1047 WP_197717788.1 sulfate ABC transporter substrate-binding protein -
  D0T90_RS02220 (D0T90_02305) - 511957..512208 (+) 252 WP_123794641.1 DUF1289 domain-containing protein -
  D0T90_RS02225 (D0T90_02310) recC 512263..515505 (-) 3243 WP_123794734.1 exodeoxyribonuclease V subunit gamma Machinery gene
  D0T90_RS02230 (D0T90_02320) - 516023..517462 (+) 1440 WP_123794642.1 PepSY domain-containing protein -
  D0T90_RS02235 (D0T90_02325) ubiD 517783..519261 (+) 1479 WP_123794643.1 4-hydroxy-3-polyprenylbenzoate decarboxylase -
  D0T90_RS02240 (D0T90_02330) - 519594..520112 (-) 519 WP_123794644.1 ABC-type transport auxiliary lipoprotein family protein -

Sequence

Protein


Download         Length: 1080 a.a.        Molecular weight: 121729.04 Da        Isoelectric Point: 4.7211

>NTDB_id=310505 D0T90_RS02225 WP_123794734.1 512263..515505(-) (recC) [Neisseria animalis strain ATCC 49930]
MPESKFYLYQSNRLETLAALFCKIQQVRPLSNALAAEEIIVQSQGMRRYLSSFLARETGVAANLRFSLPAGLTWRLMREF
IPGIPALSPFSPEVMRWRLLDLFRREDFQTASAFAASREALQSYLGSGDSADYQLAGQLADMFDQYLVYRPEWIDAWQAG
KLLDLGDDERWQAELWRFLDDGSRSAPHRVALWEQLLGALSADKLPERFFVFGISTMAPMYLQLLQKIAEHCEVFVFALN
PSEHYWGNVIEAAQILRGGDEPDLSQAGHPLLASLGKQGRDFFDFLSEIELETPVFESPFESGRDSLLHCLQFDIQTLNM
PGGGQERPSANEREKLLHDGSVRIVSAHSPLRELQVLKDGILKILQEHPDWQPHDIAVLTPNIEPYSPFIEAVFGQAQGG
AQALPYSLSDVKLSRRQPLLYALEQVLDLLESRFEVDKVLPLLESALVLNRFELEEDDVPLLHDAVAELNVHWGLDGEMR
GEADNLFTWQQAADRLVLGWMLPEGGSGVWQNVSAWHSDVNRIGMFSRFAALLHTLAHIVGQWKQPADVGMWVQRARELV
QALFLPSENDQYALQQFEQALAKWQEEAALAEFDGILPQHTVIRHLRRFLSSESQAGFLRGGITFCSMVPMRSLPFKVLC
LIGLNDGDFPRNTKAAAFDLIAKHPKKGDRARRDDDRYLFLEAILSAREILYLSYVGRSIRNDDELAPSALVSELLDTVA
AMTGTRSRDLVENWVVQHPLQAFSQRYFVGQQNADGLFSTRSDYAAALNSPQAAEEAFFSEPLGEMPSANEAVSVSQSEL
LNFWRNPVKHWLRNTLAWQEPYHDGSWESAEPFEPREGGYIADAYLEARRNHSDFGGVAAKLEAESLLPAGELGVLWQQR
FQTAAKQIDQTLLDSPKQPPYAYELVFDRFILQGSLGLLHEAGQMVFQNTSLHAPAKIALMLEHLIFCAVRPQTLGEEGC
RTYLVSNGETTVYPDIPPQQAREMLGRWLDYYHIGQSRPLPFFAKTSLAAAEEYLKKNDWEAAQQKALSAYRDSKGAKGQ
ESYTEVALVFGREEQPPVMQPLFENMIVELLAPLLAAVEA

Nucleotide


Download         Length: 3243 bp        

>NTDB_id=310505 D0T90_RS02225 WP_123794734.1 512263..515505(-) (recC) [Neisseria animalis strain ATCC 49930]
ATGCCCGAATCCAAATTCTATCTTTATCAGTCCAACCGCTTGGAAACATTGGCGGCCTTGTTTTGTAAAATCCAGCAGGT
GCGTCCGCTGTCGAATGCGTTGGCGGCGGAAGAAATTATTGTGCAGAGTCAGGGAATGCGCCGTTATTTGAGCAGTTTTC
TCGCGCGCGAAACCGGTGTGGCGGCAAATCTGCGCTTCAGCCTGCCTGCGGGTCTGACTTGGCGGCTGATGCGCGAATTT
ATTCCGGGCATTCCCGCGCTCAGCCCGTTTTCTCCTGAAGTGATGCGTTGGCGGCTGTTGGATTTGTTCCGACGGGAAGA
TTTTCAGACGGCCTCTGCGTTTGCCGCCAGCCGCGAGGCGCTGCAAAGTTATTTGGGCAGCGGGGATTCGGCGGATTACC
AGCTTGCCGGACAGCTTGCGGATATGTTTGACCAATATTTGGTGTACCGCCCCGAATGGATTGATGCGTGGCAGGCAGGG
AAGTTGCTGGATTTGGGCGATGATGAACGCTGGCAGGCGGAATTGTGGCGTTTTTTGGACGACGGTAGCCGGTCTGCGCC
GCACCGTGTGGCATTGTGGGAGCAGCTTTTGGGGGCACTGTCGGCAGACAAATTGCCCGAGCGTTTTTTTGTGTTCGGGA
TTTCTACGATGGCGCCGATGTATCTGCAACTGCTGCAAAAAATTGCCGAGCATTGCGAGGTATTCGTGTTTGCCTTGAAT
CCGAGCGAGCATTATTGGGGCAATGTGATCGAAGCGGCGCAGATTTTGCGGGGCGGCGATGAGCCGGATTTGAGTCAGGC
AGGGCATCCGCTGCTGGCTTCTTTGGGCAAGCAGGGGCGTGATTTTTTTGATTTTCTGTCGGAAATCGAGCTGGAAACGC
CGGTGTTTGAAAGTCCGTTTGAAAGCGGGCGCGACAGCCTGCTGCACTGCTTGCAGTTTGATATTCAAACGCTGAATATG
CCGGGCGGCGGGCAGGAAAGGCCGTCTGCAAATGAAAGGGAAAAACTGCTTCATGACGGTTCTGTCCGTATTGTTTCGGC
ACACAGTCCGTTGCGCGAATTACAGGTGTTGAAAGACGGGATTTTGAAGATTCTGCAGGAACACCCGGATTGGCAGCCGC
ACGATATTGCGGTGCTGACGCCGAATATCGAGCCGTACAGCCCGTTTATCGAAGCCGTGTTCGGACAGGCGCAGGGCGGC
GCGCAGGCTCTGCCGTATTCTTTGTCGGACGTGAAACTGAGCCGCCGCCAGCCGTTGCTGTATGCGCTGGAGCAGGTATT
GGATTTGTTGGAAAGCCGTTTTGAAGTGGATAAAGTGCTGCCGTTGCTGGAAAGTGCGCTGGTACTGAACCGCTTCGAGC
TGGAAGAAGACGATGTACCGCTGCTGCATGATGCGGTTGCCGAATTGAACGTGCATTGGGGGTTGGACGGCGAAATGCGC
GGAGAGGCGGATAATCTGTTTACTTGGCAGCAGGCGGCGGACAGGCTGGTGTTGGGCTGGATGCTGCCCGAGGGCGGCAG
CGGCGTATGGCAGAACGTCAGCGCTTGGCACAGCGATGTCAACCGAATCGGCATGTTCAGTCGCTTTGCCGCGTTGCTGC
ACACGCTGGCGCATATTGTCGGACAATGGAAGCAGCCGGCGGATGTCGGTATGTGGGTGCAGCGTGCGCGGGAATTGGTG
CAGGCGTTGTTTCTGCCGTCTGAAAACGACCAGTATGCCTTGCAGCAGTTTGAACAGGCTTTGGCGAAATGGCAGGAAGA
AGCGGCTTTGGCGGAGTTTGACGGAATATTGCCGCAGCATACGGTTATCCGCCATCTGCGCCGCTTTTTGAGCAGCGAGA
GCCAAGCCGGATTTTTGCGCGGCGGCATCACGTTTTGCAGCATGGTGCCGATGCGGAGCCTGCCGTTTAAAGTATTGTGC
CTGATTGGTTTGAACGACGGCGATTTTCCGCGCAACACCAAAGCAGCGGCATTCGATTTGATTGCGAAACACCCGAAAAA
AGGCGACCGCGCCCGCCGCGACGACGACCGTTATCTGTTTCTTGAAGCCATTCTCAGCGCGCGCGAAATCCTTTATTTGT
CGTATGTCGGCAGAAGCATACGCAACGACGACGAGCTTGCGCCGTCTGCATTGGTCAGCGAGCTGTTGGATACCGTTGCC
GCAATGACGGGAACGAGAAGCAGGGATTTGGTGGAGAATTGGGTGGTGCAGCATCCGTTGCAGGCATTTTCCCAAAGGTA
TTTTGTCGGGCAGCAAAATGCAGACGGCCTGTTCAGCACGCGCAGTGATTATGCGGCGGCACTCAACAGCCCGCAAGCAG
CGGAAGAAGCGTTTTTCAGCGAACCGCTGGGCGAAATGCCGTCTGCAAATGAAGCGGTTTCCGTTTCGCAGTCGGAATTG
CTGAACTTTTGGCGCAATCCCGTGAAACACTGGTTGAGAAATACCTTGGCGTGGCAGGAGCCGTATCATGACGGCTCTTG
GGAATCCGCCGAGCCGTTCGAGCCTCGGGAGGGCGGATATATTGCTGATGCTTATTTGGAAGCGCGGCGCAACCACAGCG
ATTTCGGCGGGGTTGCGGCAAAACTTGAAGCCGAAAGCCTGTTGCCGGCAGGCGAGCTCGGCGTGTTGTGGCAGCAGCGT
TTTCAGACGGCGGCCAAGCAGATCGACCAAACTTTGCTGGACAGCCCGAAGCAGCCGCCGTATGCCTATGAATTAGTGTT
TGACCGTTTTATTTTACAAGGCAGTTTGGGGCTGCTGCATGAAGCAGGGCAGATGGTGTTTCAAAACACATCCCTCCATG
CGCCCGCCAAAATCGCTTTAATGTTGGAACATTTGATTTTTTGCGCCGTCCGACCGCAAACGCTTGGCGAAGAAGGTTGC
CGGACGTATTTGGTCAGCAACGGCGAAACAACGGTTTATCCCGATATTCCGCCGCAACAGGCGCGGGAAATGTTGGGCAG
ATGGCTGGATTATTACCACATCGGACAGTCGCGGCCACTGCCGTTTTTCGCCAAAACCTCGCTGGCGGCGGCGGAAGAAT
ATCTCAAGAAAAACGATTGGGAAGCCGCACAACAAAAAGCATTGTCGGCCTATCGGGACAGCAAAGGCGCGAAAGGACAG
GAAAGCTATACCGAAGTGGCTTTGGTGTTCGGCAGGGAAGAGCAGCCGCCGGTTATGCAGCCGCTGTTTGAAAACATGAT
TGTCGAACTGCTTGCCCCTTTGCTGGCAGCAGTCGAGGCTTGA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(794-1013)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(6-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P3MVY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

66.822

99.63

0.666

Multiple sequence alignment