Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DZA53_RS18115 Genome accession   NZ_CP031697
Coordinates   3729107..3730558 (+) Length   483 a.a.
NCBI ID   WP_011258365.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain ICMP3125     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3724107..3735558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DZA53_RS18095 (DZA53_18090) - 3724256..3724747 (-) 492 WP_027703282.1 hypothetical protein -
  DZA53_RS18100 (DZA53_18095) sucD 3724920..3725795 (-) 876 WP_012444445.1 succinate--CoA ligase subunit alpha -
  DZA53_RS18105 (DZA53_18100) sucC 3725820..3726989 (-) 1170 WP_011258367.1 ADP-forming succinate--CoA ligase subunit beta -
  DZA53_RS18110 (DZA53_18105) - 3727223..3728836 (+) 1614 WP_012444444.1 HAMP domain-containing sensor histidine kinase -
  DZA53_RS18115 (DZA53_18110) pilR 3729107..3730558 (+) 1452 WP_011258365.1 sigma-54 dependent transcriptional regulator Regulator
  DZA53_RS18120 (DZA53_18115) - 3730631..3730837 (+) 207 WP_027703281.1 YhfG family protein -
  DZA53_RS24850 - 3730899..3731060 (+) 162 WP_153296778.1 hypothetical protein -
  DZA53_RS18125 (DZA53_18120) - 3731148..3731408 (+) 261 WP_027703280.1 cell filamentation protein Fic -
  DZA53_RS18130 (DZA53_18125) pilB 3731417..3733150 (-) 1734 WP_011408072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DZA53_RS26020 (DZA53_18130) - 3733185..3734710 (-) 1526 Protein_3291 hypothetical protein -
  DZA53_RS18140 (DZA53_18135) - 3734680..3735309 (-) 630 WP_011408070.1 hypothetical protein -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 52462.22 Da        Isoelectric Point: 6.8290

>NTDB_id=310477 DZA53_RS18115 WP_011258365.1 3729107..3730558(+) (pilR) [Xanthomonas oryzae pv. oryzae strain ICMP3125]
MRRAPLDNCRLSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPIYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=310477 DZA53_RS18115 WP_011258365.1 3729107..3730558(+) (pilR) [Xanthomonas oryzae pv. oryzae strain ICMP3125]
TTGCGCCGCGCCCCACTCGACAATTGTCGACTATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCTGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGATCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTCC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTATTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(440-480)

Sigma-54 interaction domain (Sigma54_activat)

(161-326)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.987

95.652

0.602
  pilR Acinetobacter baumannii strain A118

48.268

95.652

0.462

Multiple sequence alignment