Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DXY21_RS09355 Genome accession   NZ_CP031694
Coordinates   1838191..1838835 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain SRCM101368     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1833191..1843835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY21_RS09330 (DXY21_01859) - 1833590..1833931 (-) 342 WP_014305721.1 hypothetical protein -
  DXY21_RS09335 (DXY21_01861) degQ 1834397..1834537 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  DXY21_RS09340 (DXY21_01862) comQ 1834722..1835654 (+) 933 WP_025650217.1 class 1 isoprenoid biosynthesis enzyme Regulator
  DXY21_RS09350 (DXY21_01864) comP 1835807..1838110 (+) 2304 WP_069473559.1 histidine kinase Regulator
  DXY21_RS09355 (DXY21_01865) comA 1838191..1838835 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  DXY21_RS09360 (DXY21_01866) - 1838857..1839240 (+) 384 WP_003152054.1 hotdog fold thioesterase -
  DXY21_RS09365 (DXY21_01867) mnhG 1839280..1839654 (-) 375 WP_160249226.1 monovalent cation/H(+) antiporter subunit G -
  DXY21_RS09370 (DXY21_01868) - 1839638..1839922 (-) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  DXY21_RS09375 (DXY21_01869) - 1839922..1840398 (-) 477 WP_077722767.1 Na+/H+ antiporter subunit E -
  DXY21_RS09380 (DXY21_01870) - 1840404..1841885 (-) 1482 WP_160249227.1 Na+/H+ antiporter subunit D -
  DXY21_RS09385 (DXY21_01871) - 1841878..1842219 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  DXY21_RS09390 (DXY21_01872) - 1842219..1842650 (-) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=310396 DXY21_RS09355 WP_003152052.1 1838191..1838835(+) (comA) [Bacillus velezensis strain SRCM101368]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=310396 DXY21_RS09355 WP_003152052.1 1838191..1838835(+) (comA) [Bacillus velezensis strain SRCM101368]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGGACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment