Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DXY21_RS04555 Genome accession   NZ_CP031694
Coordinates   894014..894304 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM101368     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 889014..899304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY21_RS04540 (DXY21_00902) - 889234..890559 (-) 1326 WP_088005470.1 G5 and 3D domain-containing protein -
  DXY21_RS04545 (DXY21_00903) - 890694..891461 (-) 768 WP_004264700.1 TatD family hydrolase -
  DXY21_RS04550 (DXY21_00904) metG 891537..893528 (-) 1992 WP_160249138.1 methionine--tRNA ligase -
  DXY21_RS04555 (DXY21_00905) abrB 894014..894304 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  DXY21_RS04560 (DXY21_00906) rsmI 894353..895234 (-) 882 WP_060386718.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  DXY21_RS04565 (DXY21_00907) - 895209..895508 (-) 300 WP_160249139.1 GIY-YIG nuclease family protein -
  DXY21_RS04570 (DXY21_00908) - 895495..896238 (-) 744 WP_014304191.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DXY21_RS04575 (DXY21_00909) yabA 896299..896658 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  DXY21_RS04580 (DXY21_00910) ricT 896673..897500 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  DXY21_RS04585 (DXY21_00911) holB 897503..898492 (-) 990 WP_128574753.1 DNA polymerase III subunit delta' -
  DXY21_RS04590 (DXY21_00912) - 898504..898944 (-) 441 WP_004264730.1 YaaR family protein -
  DXY21_RS04595 (DXY21_00913) darA 898957..899286 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=310377 DXY21_RS04555 WP_169510469.1 894014..894304(+) (abrB) [Bacillus velezensis strain SRCM101368]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=310377 DXY21_RS04555 WP_169510469.1 894014..894304(+) (abrB) [Bacillus velezensis strain SRCM101368]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment