Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   DXY22_RS15490 Genome accession   NZ_CP031693
Coordinates   3046127..3046558 (-) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM101393     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3041127..3051558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY22_RS15440 (DXY22_03035) sinI 3041321..3041494 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  DXY22_RS15445 (DXY22_03036) sinR 3041528..3041863 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  DXY22_RS15450 (DXY22_03037) tasA 3041956..3042741 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  DXY22_RS15455 (DXY22_03038) sipW 3042805..3043377 (-) 573 WP_003246088.1 signal peptidase I SipW -
  DXY22_RS15460 (DXY22_03039) tapA 3043361..3044122 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  DXY22_RS15465 (DXY22_03040) yqzG 3044394..3044720 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  DXY22_RS15470 (DXY22_03041) spoIITA 3044762..3044941 (-) 180 WP_029726723.1 YqzE family protein -
  DXY22_RS15475 (DXY22_03042) comGG 3045012..3045386 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  DXY22_RS15480 comGF 3045387..3045770 (-) 384 WP_015251713.1 ComG operon protein ComGF Machinery gene
  DXY22_RS15485 (DXY22_03044) comGE 3045796..3046143 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  DXY22_RS15490 (DXY22_03045) comGD 3046127..3046558 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  DXY22_RS15495 (DXY22_03046) comGC 3046548..3046844 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  DXY22_RS15500 (DXY22_03047) comGB 3046858..3047895 (-) 1038 WP_044052501.1 comG operon protein ComGB Machinery gene
  DXY22_RS15505 (DXY22_03048) comGA 3047882..3048952 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  DXY22_RS15510 (DXY22_03050) - 3049165..3049362 (-) 198 WP_014480259.1 CBS domain-containing protein -
  DXY22_RS15515 (DXY22_03051) corA 3049364..3050317 (-) 954 WP_015483432.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=310341 DXY22_RS15490 WP_004398628.1 3046127..3046558(-) (comGD) [Bacillus subtilis strain SRCM101393]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=310341 DXY22_RS15490 WP_004398628.1 3046127..3046558(-) (comGD) [Bacillus subtilis strain SRCM101393]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment