Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   DXY22_RS08890 Genome accession   NZ_CP031693
Coordinates   1731226..1731804 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain SRCM101393     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1726226..1736804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY22_RS08870 (DXY22_01735) hemAT 1726737..1728035 (-) 1299 WP_015252424.1 heme-based aerotactic transducer HemAT -
  DXY22_RS08875 (DXY22_01736) comW 1728174..1729703 (-) 1530 WP_015252423.1 FAD-dependent oxidoreductase -
  DXY22_RS08880 (DXY22_01737) yhxC 1729815..1730672 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  DXY22_RS08885 (DXY22_01738) yhzC 1730700..1730933 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  DXY22_RS08890 (DXY22_01739) comK 1731226..1731804 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  DXY22_RS08895 (DXY22_01740) yhxD 1731849..1732748 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  DXY22_RS08900 (DXY22_01741) yhjA 1732966..1733235 (+) 270 WP_003224373.1 excalibur calcium-binding domain-containing protein -
  DXY22_RS08905 (DXY22_01742) yhjB 1733279..1734748 (-) 1470 WP_015252422.1 sodium:solute symporter -
  DXY22_RS08910 (DXY22_01743) yhjC 1734745..1734945 (-) 201 WP_015252421.1 DUF3311 domain-containing protein -
  DXY22_RS08915 (DXY22_01744) - 1735144..1735515 (-) 372 WP_014476361.1 hypothetical protein -
  DXY22_RS08920 (DXY22_01745) yhjE 1735667..1736290 (+) 624 WP_010886465.1 VTT domain-containing protein -
  DXY22_RS08925 (DXY22_01746) lepB 1736292..1736798 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=310314 DXY22_RS08890 WP_003245329.1 1731226..1731804(+) (comK) [Bacillus subtilis strain SRCM101393]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=310314 DXY22_RS08890 WP_003245329.1 1731226..1731804(+) (comK) [Bacillus subtilis strain SRCM101393]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment