Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   DXY22_RS00335 Genome accession   NZ_CP031693
Coordinates   63320..64009 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM101393     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 58320..69009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY22_RS00300 (DXY22_00059) flgN 58500..58982 (-) 483 WP_003227999.1 flagellar protein FlgN -
  DXY22_RS00305 (DXY22_00060) flgM 58998..59264 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  DXY22_RS00310 (DXY22_00061) yvyF 59345..59764 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  DXY22_RS00315 (DXY22_00062) comFC 59838..60560 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  DXY22_RS00320 (DXY22_00063) comFB 60524..60820 (-) 297 WP_003227989.1 late competence protein ComFB -
  DXY22_RS00325 (DXY22_00064) comFA 60880..62271 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  DXY22_RS00330 (DXY22_00065) fakBA 62377..63222 (-) 846 WP_003244125.1 DegV family protein -
  DXY22_RS00335 (DXY22_00066) degU 63320..64009 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DXY22_RS00340 (DXY22_00067) degS 64092..65249 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  DXY22_RS00345 (DXY22_00068) yvyE 65466..66119 (+) 654 WP_003227979.1 YigZ family protein -
  DXY22_RS00350 (DXY22_00069) tagV 66119..67294 (+) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  DXY22_RS00355 (DXY22_00070) tagO 67368..68444 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=310287 DXY22_RS00335 WP_003219701.1 63320..64009(-) (degU) [Bacillus subtilis strain SRCM101393]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=310287 DXY22_RS00335 WP_003219701.1 63320..64009(-) (degU) [Bacillus subtilis strain SRCM101393]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment