Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   CH556_RS00280 Genome accession   NZ_CP031692
Coordinates   56513..57229 (-) Length   238 a.a.
NCBI ID   WP_005648032.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P595-8370     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51513..62229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH556_RS00260 (CH556_00260) nrdR 51599..52048 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  CH556_RS00265 (CH556_00265) recC 52103..55489 (-) 3387 WP_116945030.1 exodeoxyribonuclease V subunit gamma -
  CH556_RS00270 (CH556_00270) comQ 55535..55822 (-) 288 WP_005648029.1 DUF5374 domain-containing protein Machinery gene
  CH556_RS00275 (CH556_00275) comP 55815..56498 (-) 684 WP_005648030.1 DUF2572 family protein Machinery gene
  CH556_RS00280 (CH556_00280) comO 56513..57229 (-) 717 WP_005648032.1 type II secretion system protein J Machinery gene
  CH556_RS00285 (CH556_00285) comN 57229..57741 (-) 513 WP_005648034.1 type II secretion system protein Machinery gene
  CH556_RS00290 (CH556_00290) suhB 57941..58744 (+) 804 WP_032824502.1 inositol-1-monophosphatase -
  CH556_RS00295 (CH556_00295) nrfE 58853..60760 (+) 1908 WP_116945029.1 heme lyase NrfEFG subunit NrfE -
  CH556_RS00300 (CH556_00300) - 60760..61290 (+) 531 WP_116945028.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26771.17 Da        Isoelectric Point: 9.5508

>NTDB_id=310253 CH556_RS00280 WP_005648032.1 56513..57229(-) (comO) [Haemophilus influenzae strain P595-8370]
MMKVLLKGQTLLALMISLSLSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEIIRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=310253 CH556_RS00280 WP_005648032.1 56513..57229(-) (comO) [Haemophilus influenzae strain P595-8370]
ATGATGAAAGTATTATTAAAAGGGCAAACCCTATTAGCGCTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACACATGTTATTACATTTAAAGTTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGCTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAACTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACCTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCATTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

99.16

100

0.992

Multiple sequence alignment