Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   CH582_RS00275 Genome accession   NZ_CP031689
Coordinates   56758..57270 (-) Length   170 a.a.
NCBI ID   WP_005651545.1    Uniprot ID   A0A0H3PJN2
Organism   Haemophilus influenzae strain P621-7028     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51758..62270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH582_RS00260 (CH582_00260) comQ 55064..55351 (-) 288 WP_012055313.1 DUF5374 domain-containing protein Machinery gene
  CH582_RS00265 (CH582_00265) comP 55344..56027 (-) 684 WP_105894718.1 DUF2572 family protein Machinery gene
  CH582_RS00270 (CH582_00270) comO 56042..56758 (-) 717 WP_012055311.1 PulJ/GspJ family protein Machinery gene
  CH582_RS00275 (CH582_00275) comN 56758..57270 (-) 513 WP_005651545.1 pilus assembly FimT family protein Machinery gene
  CH582_RS00280 (CH582_00280) suhB 57470..58273 (+) 804 WP_005664157.1 inositol-1-monophosphatase -
  CH582_RS00285 (CH582_00285) nrfE 58382..60289 (+) 1908 WP_105894719.1 heme lyase NrfEFG subunit NrfE -
  CH582_RS00290 (CH582_00290) - 60289..60819 (+) 531 WP_005648041.1 DsbE family thiol:disulfide interchange protein -
  CH582_RS00295 (CH582_00295) nrfF 60816..61973 (+) 1158 WP_105894720.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19877.15 Da        Isoelectric Point: 8.9743

>NTDB_id=310147 CH582_RS00275 WP_005651545.1 56758..57270(-) (comN) [Haemophilus influenzae strain P621-7028]
MQKGMTLVELLIGLAIISIVLNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=310147 CH582_RS00275 WP_005651545.1 56758..57270(-) (comN) [Haemophilus influenzae strain P621-7028]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGTGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCGCCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTATTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3PJN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

98.824

100

0.988

Multiple sequence alignment