Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   CH602_RS03715 Genome accession   NZ_CP031687
Coordinates   729733..730425 (+) Length   230 a.a.
NCBI ID   WP_014550482.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P641-4342     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 724733..735425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH602_RS03695 (CH602_03695) ampD 726016..726567 (-) 552 WP_042593499.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  CH602_RS03700 (CH602_03700) pilA 726682..727131 (+) 450 WP_042593498.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CH602_RS03705 (CH602_03705) pilB 727128..728522 (+) 1395 WP_011271972.1 GspE/PulE family protein Machinery gene
  CH602_RS03710 (CH602_03710) pilC 728519..729736 (+) 1218 WP_014550481.1 type II secretion system F family protein Machinery gene
  CH602_RS03715 (CH602_03715) pilD 729733..730425 (+) 693 WP_014550482.1 A24 family peptidase Machinery gene
  CH602_RS03720 (CH602_03720) rho 730479..731741 (-) 1263 WP_005648966.1 transcription termination factor Rho -
  CH602_RS03725 (CH602_03725) metJ 731989..732306 (+) 318 WP_005631186.1 met regulon transcriptional regulator MetJ -
  CH602_RS03730 (CH602_03730) cueR 732320..732706 (-) 387 WP_005648963.1 Cu(I)-responsive transcriptional regulator -
  CH602_RS03735 (CH602_03735) - 732783..732989 (+) 207 WP_005666692.1 heavy-metal-associated domain-containing protein -
  CH602_RS03740 (CH602_03740) - 733075..733281 (+) 207 WP_005666693.1 heavy-metal-associated domain-containing protein -
  CH602_RS03745 (CH602_03745) - 733355..733561 (+) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26683.67 Da        Isoelectric Point: 8.5626

>NTDB_id=310098 CH602_RS03715 WP_014550482.1 729733..730425(+) (pilD) [Haemophilus influenzae strain P641-4342]
MIYFTMFLLGGILGIALWFYLSGFITRLQQEIYATYIELFPQNFLSFQPSVSSIQQKKCGHILRYFLNVGVEFIFLQIAF
KDSTFAIWLGLTLLILWAISYLDWHYQLISTTLCLWLLTIGLFGADNNFSLLTLSESIKSAASFFIVFYAIYWIAKFYYG
KEAFGRGDYWLAMALGSFIHLETLPHFLLLASVLGICFSLIHKKKKEFIPFAPFMNLSAVIIYFVKYYGY

Nucleotide


Download         Length: 693 bp        

>NTDB_id=310098 CH602_RS03715 WP_014550482.1 729733..730425(+) (pilD) [Haemophilus influenzae strain P641-4342]
ATGATTTACTTCACAATGTTTTTATTAGGCGGTATCTTAGGGATCGCATTGTGGTTCTACCTATCTGGTTTTATTACCCG
TTTACAGCAAGAGATTTATGCGACTTATATTGAATTATTTCCACAAAACTTTCTGTCATTTCAGCCTAGCGTTTCCTCTA
TTCAACAAAAAAAGTGCGGTCATATTTTGAGGTATTTTTTAAATGTTGGGGTAGAATTTATATTTTTACAAATTGCCTTC
AAGGACTCTACTTTCGCTATATGGCTAGGGCTCACACTTCTTATCCTTTGGGCAATCAGTTATCTTGATTGGCACTATCA
ACTTATTTCTACTACACTCTGTTTATGGCTACTTACAATCGGTTTATTTGGAGCAGACAATAATTTTTCATTGCTTACGT
TATCTGAAAGCATAAAAAGTGCGGCAAGTTTTTTTATTGTTTTCTACGCAATCTATTGGATTGCAAAATTCTATTACGGA
AAAGAAGCCTTTGGACGGGGAGATTATTGGCTAGCAATGGCATTAGGAAGTTTTATTCATTTAGAAACCTTACCGCACTT
TTTATTATTAGCCTCAGTTCTTGGAATATGTTTTTCGCTTATTCATAAAAAGAAAAAAGAATTTATACCTTTTGCCCCTT
TTATGAACTTATCAGCTGTCATCATTTATTTCGTCAAATATTACGGATATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(92-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

89.565

100

0.896
  pilD Haemophilus influenzae Rd KW20

89.13

100

0.891

Multiple sequence alignment