Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | CH602_RS03010 | Genome accession | NZ_CP031687 |
| Coordinates | 598420..598833 (+) | Length | 137 a.a. |
| NCBI ID | WP_011272047.1 | Uniprot ID | Q4QNA9 |
| Organism | Haemophilus influenzae strain P641-4342 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 593420..603833
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH602_RS02990 (CH602_02990) | - | 593908..596502 (-) | 2595 | WP_042593320.1 | penicillin-binding protein 1A | - |
| CH602_RS02995 (CH602_02995) | comA | 596601..597398 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| CH602_RS03000 (CH602_03000) | comB | 597399..597905 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| CH602_RS03005 (CH602_03005) | comC | 597902..598423 (+) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| CH602_RS03010 (CH602_03010) | comD | 598420..598833 (+) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| CH602_RS03015 (CH602_03015) | comE | 598843..600180 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| CH602_RS03020 (CH602_03020) | - | 600193..600879 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| CH602_RS03025 (CH602_03025) | nfuA | 600955..601551 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| CH602_RS03030 (CH602_03030) | nudC | 601618..602412 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| CH602_RS03035 (CH602_03035) | - | 602448..603038 (+) | 591 | WP_005686892.1 | YjaG family protein | - |
| CH602_RS03040 (CH602_03040) | - | 603178..603450 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15695.85 Da Isoelectric Point: 4.5625
>NTDB_id=310089 CH602_RS03010 WP_011272047.1 598420..598833(+) (comD) [Haemophilus influenzae strain P641-4342]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=310089 CH602_RS03010 WP_011272047.1 598420..598833(+) (comD) [Haemophilus influenzae strain P641-4342]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comD | Haemophilus influenzae Rd KW20 |
99.27 |
100 |
0.993 |