Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   SSU_RS04240 Genome accession   NC_012925
Coordinates   858637..859302 (-) Length   221 a.a.
NCBI ID   WP_012775103.1    Uniprot ID   A0A0H3MVW7
Organism   Streptococcus suis P1/7     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 853637..864302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU_RS10100 (SSU0823) - 853715..854616 (+) 902 Protein_774 Abi family protein -
  SSU_RS04225 (SSU0825) xerS 854975..856045 (+) 1071 WP_012775436.1 tyrosine recombinase XerS Machinery gene
  SSU_RS04230 (SSU0826) - 856115..857623 (-) 1509 WP_011922400.1 phosphomannomutase/phosphoglucomutase -
  SSU_RS04235 (SSU0827) - 857699..858640 (-) 942 WP_012775102.1 sensor histidine kinase -
  SSU_RS04240 (SSU0828) braR 858637..859302 (-) 666 WP_012775103.1 response regulator transcription factor Regulator
  SSU_RS04245 (SSU0829) - 859341..859598 (-) 258 WP_011922404.1 type II toxin-antitoxin system RelE family toxin -
  SSU_RS04250 (SSU0830) relB 859582..859833 (-) 252 WP_012775104.1 type II toxin-antitoxin system RelB family antitoxin -
  SSU_RS04255 (SSU0831) - 859925..861895 (-) 1971 WP_012775105.1 ABC transporter permease -
  SSU_RS04260 (SSU0832) - 861896..862648 (-) 753 WP_011922409.1 ABC transporter ATP-binding protein -
  SSU_RS04265 (SSU0833) - 862784..863518 (-) 735 WP_011922410.1 ABC transporter permease -
  SSU_RS04270 (SSU0834) - 863520..864266 (-) 747 WP_011922411.1 ABC transporter permease -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25460.22 Da        Isoelectric Point: 4.7792

>NTDB_id=31003 SSU_RS04240 WP_012775103.1 858637..859302(-) (braR) [Streptococcus suis P1/7]
MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDINLPYYNGFYWTTEIRKTMTMPIIFIS
SSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSSELSIDQFQLSLDGRFSNESEQVQLSPTETKILS
ALLERQGQIVSKDELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGYLIK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=31003 SSU_RS04240 WP_012775103.1 858637..859302(-) (braR) [Streptococcus suis P1/7]
ATGAAAAAAGAGAAGATTTATATTGTTGAAGATGATGAGATGATTGTCCAACTCTTGAAGCAGCATTTGGGAAAATCTTA
TCAGGTAGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTTGCGGAAATCAAACCAGACTTAGTGCTGATGGACA
TTAACTTGCCCTATTACAACGGTTTTTATTGGACGACAGAAATCCGTAAAACCATGACCATGCCCATTATCTTTATCTCT
TCTAGCGATGATGAGATGAATGCGGTCATGGCCATGAACATGGGTGGCGATGATTTTGTCTCCAAGCCATTTTCTCTAGG
AATTTTGGATGCCAAAATCGGAGCCTTCCTGCGTCGGGTTAATCAATTCAGCAAATCGAGCGAATTGTCTATCGATCAGT
TCCAGCTTAGTTTGGACGGGCGATTTTCAAACGAATCGGAACAGGTTCAGCTTTCACCTACTGAAACCAAGATTTTATCC
GCCTTACTAGAAAGACAAGGGCAGATTGTCAGCAAGGATGAACTCTTGGAAAAACTCTGGGAAAATGAAGAATTTATCGA
CCAGAATACGCTCAATGTAAACATGACCAGACTGCGTAAGAAGGTGAGCGAAGTCGGGTTTGAACGAATTCATACCGTTC
GTGGCGTGGGGTACTTGATCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-219)

Response regulator receiver domain (Response_reg)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MVW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.248

98.643

0.466

Multiple sequence alignment