Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SSU_RS04225 Genome accession   NC_012925
Coordinates   854975..856045 (+) Length   356 a.a.
NCBI ID   WP_012775436.1    Uniprot ID   -
Organism   Streptococcus suis P1/7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 849975..861045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU_RS04205 (SSU0820) - 851090..851758 (+) 669 WP_011922395.1 SatD family protein -
  SSU_RS04210 (SSU0821) - 851762..852502 (+) 741 WP_011922396.1 DUF3307 domain-containing protein -
  SSU_RS04215 (SSU0822) - 852567..853004 (+) 438 WP_011922397.1 AAA family ATPase -
  SSU_RS10100 (SSU0823) - 853715..854616 (+) 902 Protein_774 Abi family protein -
  SSU_RS04225 (SSU0825) xerS 854975..856045 (+) 1071 WP_012775436.1 tyrosine recombinase XerS Machinery gene
  SSU_RS04230 (SSU0826) - 856115..857623 (-) 1509 WP_011922400.1 phosphomannomutase/phosphoglucomutase -
  SSU_RS04235 (SSU0827) - 857699..858640 (-) 942 WP_012775102.1 sensor histidine kinase -
  SSU_RS04240 (SSU0828) braR 858637..859302 (-) 666 WP_012775103.1 response regulator transcription factor Regulator
  SSU_RS04245 (SSU0829) - 859341..859598 (-) 258 WP_011922404.1 type II toxin-antitoxin system RelE family toxin -
  SSU_RS04250 (SSU0830) relB 859582..859833 (-) 252 WP_012775104.1 type II toxin-antitoxin system RelB family antitoxin -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41501.70 Da        Isoelectric Point: 9.2257

>NTDB_id=31002 SSU_RS04225 WP_012775436.1 854975..856045(+) (xerS) [Streptococcus suis P1/7]
MRRELLLEKIDQLKEIMPWFVLEYYQSKLAVPYSFTTLYEYLKEYRRFFEWLQDSDLVAVERIADIPLDVLEHLTKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLFKYLTEEVENEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVDKEYQVNLSKRALSSFQKNKERDLAILALLLASGVRLSEAVNLDLRDVNLNMMIIEVTRKGGKRDS
VNVAGFAKLYLEAYMGIRQQRYKAEKTDTAFFLSEYRGLPNRIDASSIEKMVAKYSADFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=31002 SSU_RS04225 WP_012775436.1 854975..856045(+) (xerS) [Streptococcus suis P1/7]
ATGAGACGCGAGTTATTATTGGAAAAAATTGATCAACTAAAAGAAATTATGCCTTGGTTTGTTCTGGAATATTATCAGTC
AAAATTGGCTGTGCCTTACAGTTTTACTACCTTATATGAATACTTGAAAGAATACCGTCGTTTTTTTGAATGGTTACAGG
ATTCGGATTTGGTGGCTGTTGAACGGATTGCTGACATTCCGCTGGATGTTCTGGAACATCTGACAAAAAAAGATATGGAA
GCTTTCATTCTTTATCTGCGGGAGCGTCCCTTGCTGAACGCCAATACCACGCAGAATGGTGTGTCGCAGACCACCATTAA
CCGTACCCTCTCGGCCCTTTCTAGTCTCTTCAAGTATTTAACCGAAGAAGTGGAGAATGAGCAGGGCGAGCCCTACTTCT
ACCGCAATGTCATGAAAAAGGTATCTACTAAGAAGAAGAAGGAAACCTTGGCAGCGCGGGCGGAGAACATCAAGCAAAAG
CTCTTTTTGGGCGATGAAACGATGGAGTTCTTGGACTATGTGGACAAGGAATACCAAGTCAATCTCTCTAAACGTGCCCT
CTCCTCCTTCCAGAAAAATAAGGAGCGGGATTTGGCGATTCTGGCGCTTCTCTTGGCTTCTGGCGTCCGTCTGTCAGAAG
CGGTGAATTTGGATCTTCGAGATGTAAACCTCAATATGATGATTATCGAAGTAACTCGTAAGGGTGGTAAACGGGACTCG
GTCAATGTGGCTGGGTTTGCTAAGCTCTACTTAGAAGCCTACATGGGCATCCGTCAGCAACGCTACAAGGCTGAAAAAAC
GGATACAGCCTTCTTCCTGTCCGAATACCGTGGTCTGCCTAACCGTATCGATGCTTCTTCTATTGAAAAAATGGTTGCCA
AGTACTCTGCGGACTTCAAGATACGCGTAACCCCCCACAAACTCCGTCACACATTGGCAACTCGTCTCTACGACGCCACC
AAGTCGCAAGTTCTAGTCAGTCATCAGCTGGGCCATGCCAATACCCAGGTCACCGATCTCTACACCCATATCGTCAACGA
TGAACAGAAAAATGCTCTGGATCAGTTGTGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(190-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.865

100

0.829

Multiple sequence alignment