Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | CH613_RS02965 | Genome accession | NZ_CP031684 |
| Coordinates | 577487..577900 (+) | Length | 137 a.a. |
| NCBI ID | WP_011272047.1 | Uniprot ID | Q4QNA9 |
| Organism | Haemophilus influenzae strain P652-8881 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 572487..582900
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH613_RS02945 (CH613_02945) | - | 572969..575569 (-) | 2601 | WP_116946748.1 | penicillin-binding protein 1A | - |
| CH613_RS02950 (CH613_02950) | comA | 575668..576465 (+) | 798 | WP_011961684.1 | pilus assembly protein PilM | Machinery gene |
| CH613_RS02955 (CH613_02955) | comB | 576466..576972 (+) | 507 | WP_011961685.1 | hypothetical protein | Machinery gene |
| CH613_RS02960 (CH613_02960) | comC | 576969..577490 (+) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| CH613_RS02965 (CH613_02965) | comD | 577487..577900 (+) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| CH613_RS02970 (CH613_02970) | comE | 577910..579247 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| CH613_RS02975 (CH613_02975) | - | 579260..579946 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| CH613_RS02980 (CH613_02980) | nfuA | 580022..580618 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| CH613_RS02985 (CH613_02985) | nudC | 580685..581479 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| CH613_RS02990 (CH613_02990) | - | 581515..582105 (+) | 591 | WP_005686892.1 | YjaG family protein | - |
| CH613_RS02995 (CH613_02995) | - | 582245..582517 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15695.85 Da Isoelectric Point: 4.5625
>NTDB_id=309986 CH613_RS02965 WP_011272047.1 577487..577900(+) (comD) [Haemophilus influenzae strain P652-8881]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=309986 CH613_RS02965 WP_011272047.1 577487..577900(+) (comD) [Haemophilus influenzae strain P652-8881]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comD | Haemophilus influenzae Rd KW20 |
99.27 |
100 |
0.993 |