Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   CH624_RS00290 Genome accession   NZ_CP031682
Coordinates   57355..57867 (-) Length   170 a.a.
NCBI ID   WP_013526183.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P665-7858     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52355..62867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH624_RS00275 (CH624_00275) comQ 55661..55948 (-) 288 WP_012055313.1 DUF5374 domain-containing protein Machinery gene
  CH624_RS00280 (CH624_00280) comP 55941..56624 (-) 684 WP_042611090.1 DUF2572 family protein Machinery gene
  CH624_RS00285 (CH624_00285) comO 56639..57355 (-) 717 WP_005651546.1 PulJ/GspJ family protein Machinery gene
  CH624_RS00290 (CH624_00290) comN 57355..57867 (-) 513 WP_013526183.1 pilus assembly FimT family protein Machinery gene
  CH624_RS00295 (CH624_00295) suhB 58067..58870 (+) 804 WP_040035216.1 inositol-1-monophosphatase -
  CH624_RS00300 (CH624_00300) nrfE 58979..60886 (+) 1908 WP_112109718.1 heme lyase NrfEFG subunit NrfE -
  CH624_RS00305 (CH624_00305) - 60883..61413 (+) 531 WP_042611088.1 DsbE family thiol:disulfide interchange protein -
  CH624_RS00310 (CH624_00310) nrfF 61410..62564 (+) 1155 WP_112109719.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19849.10 Da        Isoelectric Point: 8.9743

>NTDB_id=309903 CH624_RS00290 WP_013526183.1 57355..57867(-) (comN) [Haemophilus influenzae strain P665-7858]
MQKGMTLVELLIGLAIISIALNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=309903 CH624_RS00290 WP_013526183.1 57355..57867(-) (comN) [Haemophilus influenzae strain P665-7858]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGCGCTGAATTTTGCCGTGCCATT
ATGGAAAACCGATTCACCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACAGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTACTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

99.412

100

0.994

Multiple sequence alignment