Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   CH624_RS00285 Genome accession   NZ_CP031682
Coordinates   56639..57355 (-) Length   238 a.a.
NCBI ID   WP_005651546.1    Uniprot ID   A0A0D0IHM0
Organism   Haemophilus influenzae strain P665-7858     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51639..62355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH624_RS00265 (CH624_00265) nrdR 51731..52180 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  CH624_RS00270 (CH624_00270) recC 52235..55615 (-) 3381 WP_112109717.1 exodeoxyribonuclease V subunit gamma -
  CH624_RS00275 (CH624_00275) comQ 55661..55948 (-) 288 WP_012055313.1 DUF5374 domain-containing protein Machinery gene
  CH624_RS00280 (CH624_00280) comP 55941..56624 (-) 684 WP_042611090.1 DUF2572 family protein Machinery gene
  CH624_RS00285 (CH624_00285) comO 56639..57355 (-) 717 WP_005651546.1 PulJ/GspJ family protein Machinery gene
  CH624_RS00290 (CH624_00290) comN 57355..57867 (-) 513 WP_013526183.1 pilus assembly FimT family protein Machinery gene
  CH624_RS00295 (CH624_00295) suhB 58067..58870 (+) 804 WP_040035216.1 inositol-1-monophosphatase -
  CH624_RS00300 (CH624_00300) nrfE 58979..60886 (+) 1908 WP_112109718.1 heme lyase NrfEFG subunit NrfE -
  CH624_RS00305 (CH624_00305) - 60883..61413 (+) 531 WP_042611088.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26759.12 Da        Isoelectric Point: 9.5508

>NTDB_id=309902 CH624_RS00285 WP_005651546.1 56639..57355(-) (comO) [Haemophilus influenzae strain P665-7858]
MMKVLLKGQTLLALMISLSLSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=309902 CH624_RS00285 WP_005651546.1 56639..57355(-) (comO) [Haemophilus influenzae strain P665-7858]
ATGATGAAAGTATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACACATGCTATTACATTTAAAGTTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCACCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGCTATGAAACATCCCTTGTTGTTGCACTTTGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0IHM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

99.58

100

0.996

Multiple sequence alignment