Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   CH624_RS00280 Genome accession   NZ_CP031682
Coordinates   55941..56624 (-) Length   227 a.a.
NCBI ID   WP_042611090.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P665-7858     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50941..61624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH624_RS00265 (CH624_00265) nrdR 51731..52180 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  CH624_RS00270 (CH624_00270) recC 52235..55615 (-) 3381 WP_112109717.1 exodeoxyribonuclease V subunit gamma -
  CH624_RS00275 (CH624_00275) comQ 55661..55948 (-) 288 WP_012055313.1 DUF5374 domain-containing protein Machinery gene
  CH624_RS00280 (CH624_00280) comP 55941..56624 (-) 684 WP_042611090.1 DUF2572 family protein Machinery gene
  CH624_RS00285 (CH624_00285) comO 56639..57355 (-) 717 WP_005651546.1 PulJ/GspJ family protein Machinery gene
  CH624_RS00290 (CH624_00290) comN 57355..57867 (-) 513 WP_013526183.1 pilus assembly FimT family protein Machinery gene
  CH624_RS00295 (CH624_00295) suhB 58067..58870 (+) 804 WP_040035216.1 inositol-1-monophosphatase -
  CH624_RS00300 (CH624_00300) nrfE 58979..60886 (+) 1908 WP_112109718.1 heme lyase NrfEFG subunit NrfE -
  CH624_RS00305 (CH624_00305) - 60883..61413 (+) 531 WP_042611088.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25354.17 Da        Isoelectric Point: 9.5163

>NTDB_id=309901 CH624_RS00280 WP_042611090.1 55941..56624(-) (comP) [Haemophilus influenzae strain P665-7858]
MTTQKGIITLTILIFISGLLTAFLLLDDSHLSFFRAQQNQRKHYVERTLQLQKMTATKKQTACIDLPLNNNESVKQISIA
LEGAADAIQYFLWCERMSLFKKSPKKGDNQGALKDFVSGEKLAYFRPHFSSPPRILNANKMPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITSGNLTLDGVTLAYGKKTVVALVQQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=309901 CH624_RS00280 WP_042611090.1 55941..56624(-) (comP) [Haemophilus influenzae strain P665-7858]
ATGACAACACAAAAAGGCATTATCACGCTGACTATTCTGATTTTTATTTCAGGTTTATTAACTGCGTTTTTATTGTTGGA
TGACAGCCATTTAAGTTTTTTTCGTGCGCAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAACTGCAAAAAA
TGACCGCGACGAAAAAACAAACTGCCTGTATTGATTTACCCTTAAATAATAATGAAAGTGTGAAGCAAATCAGCATCGCC
CTTGAGGGTGCCGCCGATGCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGTGCATTGAAAGATTTTGTGAGTGGCGAAAAACTTGCCTATTTTCGACCGCACTTTTCTTCCCCACCCA
GAATTTTAAACGCGAATAAAATGCCTAAACTGTATTGGTTTTCAGATTCACAAGCAGAAGTTGAAATTAATGGCACCGTA
TCTGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGAATTAGTGGCGCAGTGATTACCAGTGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTTGCTTTAGTGCAACAATATAGTCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

97.357

100

0.974

Multiple sequence alignment