Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   CH631_RS05390 Genome accession   NZ_CP031680
Coordinates   1053942..1056308 (+) Length   788 a.a.
NCBI ID   WP_116940001.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P672-7661     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1048942..1061308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH631_RS05365 (CH631_05365) - 1049289..1050587 (-) 1299 WP_105894299.1 LysM peptidoglycan-binding domain-containing protein -
  CH631_RS05370 (CH631_05370) tsaE 1050595..1051071 (-) 477 WP_116939998.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  CH631_RS05375 (CH631_05375) folK 1051147..1051629 (-) 483 WP_116940000.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  CH631_RS05380 (CH631_05380) pcnB 1051638..1052996 (-) 1359 WP_116940291.1 polynucleotide adenylyltransferase PcnB -
  CH631_RS05385 (CH631_05385) dksA 1053245..1053682 (-) 438 WP_005657744.1 RNA polymerase-binding protein DksA -
  CH631_RS05390 (CH631_05390) rec2 1053942..1056308 (+) 2367 WP_116940001.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CH631_RS05395 (CH631_05395) msbA 1056349..1058112 (+) 1764 WP_005663238.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  CH631_RS05400 (CH631_05400) lpxK 1058185..1059183 (+) 999 WP_116940003.1 tetraacyldisaccharide 4'-kinase -
  CH631_RS05405 (CH631_05405) kdsB 1059254..1060018 (+) 765 WP_048951387.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89564.06 Da        Isoelectric Point: 10.1093

>NTDB_id=309859 CH631_RS05390 WP_116940001.1 1053942..1056308(+) (rec2) [Haemophilus influenzae strain P672-7661]
MKLNLITLAVLLIVADLTLLFLPQPLLLPWQVALVIALVLIFLFIFLRRNFLVSLAFFVASLGYFHYSALSLLQQAQNIT
AQKQVVTFKIQEILHQQDYQTLIATATLENNLQEQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFNRQQWYFSK
GITAFGTVKSAVKIANVSSLRAEKLQQVKKQTEGLSLQGLLIALAFGERAWLDKNTWSIYQQTNTAHLIAISGLHIGLAM
GIGFYLARVVQVFFPTRFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVFFVQIMRRYYSPFQLFTLVVGFLLF
CDPLMPLSVSFWLSCGAVGCLILWYRYVPFSLFQWKNRPFSPKVRWILNLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LMAVPIYSFFLVPLILFAVFTNGAVFSWQLANKLAEGITGLISVFQGNWLTVSFNLALFLTALCAGIFMLIIWRIYREPE
ASPSTWKIKRPRFFTLNLSKPLLKNDQNNVLRCSFGIILLCFTILLFKQLSKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGSMAELEILPYLQRKGIVLEKLILSHDDNDHAGGASTILKAYPNVELITPSQKNYGENYRTFCTAGRDWHWQG
LHFQILSPHNVVTRADNPHSCVILVDDGKHSVLLTGDAEAKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYSVMERLHRYKSAVENTAVSGQVRVNFFQDRLEIQQARTKFSPWYARVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=309859 CH631_RS05390 WP_116940001.1 1053942..1056308(+) (rec2) [Haemophilus influenzae strain P672-7661]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGTTAATTGTTGCGGATTTAACGTTGTTATTTCTACCGCAACCGTTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTCTTGCGTAGAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCCTCTCTTGGCTATTTTCATTATTCGGCTTTGAGTTTATTACAACAAGCTCAAAATATTACC
GCTCAAAAGCAAGTGGTAACTTTTAAGATTCAAGAAATTTTGCACCAACAGGATTATCAAACGCTTATCGCCACAGCAAC
ATTGGAGAATAATTTGCAAGAACAACGAATTTTCTTAAATTGGAAAGCGAAAGAGGTGCCTCAATTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCACGATTAAATTTCGGTGGGTTTAATCGGCAACAATGGTATTTTTCAAAG
GGGATTACCGCTTTTGGAACGGTAAAAAGTGCGGTGAAAATTGCGAATGTTTCATCATTGCGTGCAGAAAAATTGCAACA
AGTAAAGAAGCAAACGGAAGGATTATCTCTACAAGGTTTATTGATTGCGTTAGCTTTTGGCGAACGGGCTTGGTTAGATA
AAAACACTTGGTCAATTTACCAACAAACGAATACCGCACATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGAATTGGATTTTACTTGGCTCGTGTTGTGCAAGTATTTTTCCCAACCCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCGTATTTAGCTGGTTTTAGCGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTCTTCGTTCAAATAATGAGGAGATATTATTCGCCTTTTCAGCTTTTTACGTTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCATTAATGCCGCTTTCGGTCAGTTTTTGGCTTTCTTGTGGTGCAGTTGGTTGTTTGATCCTCTGGTATCGTTA
TGTGCCTTTTTCACTTTTTCAATGGAAAAATCGTCCCTTTTCCCCAAAAGTGCGGTGGATTTTGAATTTATTTCATTTGC
AATTTGGGTTATTGCTCTTTTTTACGCCTTTGCAACTTTTTCTATTTAATGGTTTATCGTTGAGTGGATTTTTAGCCAAT
CTTATGGCTGTTCCAATTTATAGTTTTTTCCTTGTGCCATTAATTTTATTTGCTGTTTTTACCAACGGCGCGGTTTTTTC
TTGGCAACTAGCAAATAAGCTAGCCGAAGGAATTACTGGGTTAATTTCTGTTTTTCAAGGAAATTGGCTCACGGTTTCAT
TTAATTTAGCATTATTTTTAACCGCACTTTGTGCAGGAATTTTTATGTTAATTATTTGGCGTATTTATCGAGAACCAGAG
GCTTCACCATCAACTTGGAAAATTAAACGACCAAGATTTTTTACATTAAATCTCAGTAAACCTTTGCTAAAAAATGATCA
GAACAACGTTTTGCGATGTTCTTTCGGCATTATCTTACTGTGTTTTACTATTTTGTTGTTTAAACAATTGAGCAAACCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAGTTGGAAATTTTGCCTTATTTGCAAAGAAAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGACGATAACGATCACGCAGGCGGTGCTTCGACAATTTTAAAGGCATATCCCAATGTGGAAT
TGATTACCCCTTCACAAAAAAATTATGGGGAAAATTACCGCACTTTTTGTACTGCTGGGCGTGATTGGCATTGGCAAGGG
TTACATTTTCAAATACTTTCTCCTCATAATGTTGTGACACGAGCTGATAATCCCCATTCTTGTGTGATTTTAGTCGATGA
TGGAAAGCATAGCGTTTTACTGACTGGCGATGCTGAAGCAAAAAATGAACAAATTTTTGCCCGCACTTTAGGCAAAATCG
ATGTGTTGCAAGTGGGGCATCATGGGAGTAAAACATCGACAAGTGAATACTTGCTTTCTCAGGTTAGACCAGATGTAGCG
ATTATTTCTAGTGGGCGTTGGAATCCGTGGAAATTCCCTCATTATTCGGTTATGGAAAGGCTTCATCGCTATAAAAGTGC
GGTAGAAAATACCGCTGTTTCGGGGCAAGTGCGGGTAAATTTTTTTCAAGACCGATTAGAAATCCAGCAAGCTCGCACAA
AATTTTCCCCTTGGTATGCGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(204-473)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)

Domain of unknown function (DUF4131) (DUF4131)

(28-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

95.558

100

0.956

Multiple sequence alignment