Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   EYQ98_RS04950 Genome accession   NZ_CP038186
Coordinates   1005104..1005820 (+) Length   238 a.a.
NCBI ID   WP_009329065.1    Uniprot ID   A0ABX3I5L7
Organism   Bacillus licheniformis strain MCC 2514     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1000104..1010820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYQ98_RS04930 (EYQ98_04930) - 1000572..1000958 (+) 387 WP_003179739.1 DUF1992 domain-containing protein -
  EYQ98_RS04935 (EYQ98_04935) - 1001020..1001727 (+) 708 Protein_933 alanine:cation symporter family protein -
  EYQ98_RS04940 (EYQ98_04940) treP 1001908..1003320 (+) 1413 WP_069500302.1 PTS system trehalose-specific EIIBC component -
  EYQ98_RS04945 (EYQ98_04945) treC 1003394..1005082 (+) 1689 WP_003179746.1 alpha,alpha-phosphotrehalase -
  EYQ98_RS04950 (EYQ98_04950) treR 1005104..1005820 (+) 717 WP_009329065.1 trehalose operon repressor Regulator
  EYQ98_RS04955 (EYQ98_04955) - 1005927..1006619 (+) 693 WP_069500304.1 N-acetyltransferase -
  EYQ98_RS22295 - 1006746..1007303 (+) 558 WP_240687882.1 NTTRR-F1 domain -
  EYQ98_RS22610 - 1007300..1008070 (+) 771 WP_276320919.1 hypothetical protein -
  EYQ98_RS04965 (EYQ98_04965) - 1008290..1010023 (+) 1734 WP_080618597.1 NTTRR-F1 domain -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27767.56 Da        Isoelectric Point: 5.8721

>NTDB_id=309859 EYQ98_RS04950 WP_009329065.1 1005104..1005820(+) (treR) [Bacillus licheniformis strain MCC 2514]
MKINKYMMIYKQIAEQIDQSILNAGDILPSENDLAEQHDTSRETVRKALNVLAQNGYIQKIKGKGSVVLHREKMQFPVSG
LVSFKELSETLGKETSTTVHEFGLTHPDAYIQKQLRTSGDEEVWRVVRSRNINGERIILDKDYFIRKHVPLLTKEICEDS
IYQYLEDECGLVISYAHKEIVVEPCTAEDQEYLDLNGYEHIVVVKNFVFLDDTTLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=309859 EYQ98_RS04950 WP_009329065.1 1005104..1005820(+) (treR) [Bacillus licheniformis strain MCC 2514]
ATGAAGATCAACAAGTATATGATGATTTACAAACAAATCGCGGAACAAATCGATCAAAGCATACTGAATGCCGGAGATAT
CCTGCCGTCTGAAAACGACCTTGCCGAACAGCACGACACCTCGAGGGAAACCGTTCGGAAAGCGCTGAACGTGCTTGCTC
AGAACGGATATATTCAGAAGATTAAAGGGAAGGGGTCAGTCGTGCTGCACAGGGAGAAAATGCAGTTCCCGGTTTCCGGT
TTGGTCAGCTTTAAGGAGCTTTCAGAAACGCTCGGAAAAGAGACAAGCACGACGGTCCATGAGTTCGGCTTGACGCATCC
GGACGCATATATTCAAAAGCAGCTCCGCACTTCCGGAGATGAAGAGGTATGGCGGGTTGTCAGGTCGCGGAACATCAACG
GAGAGCGTATCATCCTGGATAAAGACTATTTTATCCGCAAACACGTGCCGCTTTTAACGAAAGAAATATGCGAGGACTCG
ATCTATCAATACCTTGAAGATGAATGCGGGCTCGTCATCAGCTATGCTCATAAGGAAATTGTAGTCGAGCCATGTACGGC
AGAGGATCAAGAGTATTTGGATCTGAACGGATACGAGCACATTGTGGTCGTGAAAAATTTCGTTTTTCTTGATGATACGA
CCTTGTTTCAATATACGGAAAGCAGACACCGCCTTGATAAATTCCGGTTTGTCGATTTTGCAAGAAGAGAAAAGTAG

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

41.525

99.16

0.412

Multiple sequence alignment