Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   CH635_RS03675 Genome accession   NZ_CP031679
Coordinates   707793..708332 (-) Length   179 a.a.
NCBI ID   WP_011272006.1    Uniprot ID   Q4QNH6
Organism   Haemophilus influenzae strain P676-2514     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 702793..713332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH635_RS03645 (CH635_03640) fdx 703196..703537 (+) 342 WP_005656373.1 ISC system 2Fe-2S type ferredoxin -
  CH635_RS03650 (CH635_03645) iscX 703537..703731 (+) 195 WP_005659903.1 Fe-S cluster assembly protein IscX -
  CH635_RS03655 (CH635_03650) - 703782..704396 (-) 615 WP_011272010.1 YfgM family protein -
  CH635_RS03660 (CH635_03655) hisS 704414..705685 (-) 1272 WP_084999851.1 histidine--tRNA ligase -
  CH635_RS03665 (CH635_03660) ispG 705695..706801 (-) 1107 WP_005656366.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  CH635_RS03670 (CH635_03665) - 706810..707721 (-) 912 WP_006996132.1 RodZ domain-containing protein -
  CH635_RS03675 (CH635_03670) pilF/pilF2 707793..708332 (-) 540 WP_011272006.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  CH635_RS03680 (CH635_03675) - 708432..709583 (-) 1152 WP_162626780.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  CH635_RS03685 (CH635_03680) - 709830..710708 (+) 879 WP_005659920.1 D-alanyl-D-alanine carboxypeptidase family protein -
  CH635_RS03690 (CH635_03685) - 711073..711954 (+) 882 WP_005656358.1 metal ABC transporter substrate-binding protein -
  CH635_RS03695 (CH635_03690) - 711954..712874 (+) 921 WP_005686805.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 20554.24 Da        Isoelectric Point: 8.9421

>NTDB_id=309817 CH635_RS03675 WP_011272006.1 707793..708332(-) (pilF/pilF2) [Haemophilus influenzae strain P676-2514]
MQTISKQLSAVIFPFIFSACVSQSASSLDHQAAAKARVELALSYLQQNNPQLAKINLDKALQHDKNYYLVHSALAHYYQQ
QGQIENAFREYEIAVKLNHKQGDVHNNFGTFLCSQKKFEQAQQQFELALNSPNYYHQADTFENIALCAYSAKKMDIYQQT
LEKLRQINGKRAEKFNSLK

Nucleotide


Download         Length: 540 bp        

>NTDB_id=309817 CH635_RS03675 WP_011272006.1 707793..708332(-) (pilF/pilF2) [Haemophilus influenzae strain P676-2514]
ATGCAAACAATAAGTAAACAACTAAGTGCGGTTATTTTCCCTTTCATTTTTTCTGCCTGCGTTTCACAATCTGCGTCTAG
CTTAGATCATCAAGCTGCCGCCAAAGCGCGAGTGGAACTCGCTTTGAGCTATCTTCAGCAAAATAATCCTCAACTGGCTA
AAATCAATTTAGACAAAGCACTTCAACACGATAAAAATTACTATCTCGTACATTCAGCACTTGCACATTATTATCAACAA
CAAGGGCAAATAGAAAATGCCTTTCGTGAGTATGAAATAGCCGTAAAACTTAATCATAAACAAGGCGATGTACATAATAA
TTTTGGTACGTTTCTATGTAGTCAAAAGAAATTTGAGCAAGCCCAGCAACAATTTGAATTAGCCCTTAATTCGCCGAATT
ATTATCATCAAGCAGATACATTTGAAAATATCGCGCTTTGTGCTTATTCCGCGAAAAAAATGGATATTTATCAGCAAACA
TTAGAAAAATTACGTCAAATCAATGGAAAACGTGCGGAAAAATTCAATAGTCTAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QNH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

96.089

100

0.961
  pilF Glaesserella parasuis strain SC1401

45.251

100

0.453

Multiple sequence alignment