Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D7Y56_RS15720 Genome accession   NZ_CP038147
Coordinates   3193689..3194357 (-) Length   222 a.a.
NCBI ID   WP_030634746.1    Uniprot ID   -
Organism   Streptomyces sp. S501     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3188689..3199357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7Y56_RS15695 (D7Y56_15695) - 3188861..3189370 (-) 510 WP_014155407.1 MarR family transcriptional regulator -
  D7Y56_RS15700 (D7Y56_15700) - 3189463..3190413 (+) 951 WP_030122976.1 ABC transporter ATP-binding protein -
  D7Y56_RS15705 (D7Y56_15705) - 3190410..3192068 (+) 1659 WP_015577784.1 ABC transporter membrane protein -
  D7Y56_RS33530 - 3192105..3192491 (+) 387 WP_015577785.1 hypothetical protein -
  D7Y56_RS15715 (D7Y56_15715) - 3192474..3193679 (-) 1206 WP_015577786.1 cytochrome P450 -
  D7Y56_RS15720 (D7Y56_15720) vraR 3193689..3194357 (-) 669 WP_030634746.1 response regulator transcription factor Regulator
  D7Y56_RS15725 (D7Y56_15725) - 3194354..3195661 (-) 1308 WP_015577788.1 histidine kinase -
  D7Y56_RS15730 (D7Y56_15730) - 3195735..3196607 (-) 873 WP_030634743.1 alpha/beta hydrolase -
  D7Y56_RS15735 (D7Y56_15735) kynU 3196723..3197918 (-) 1196 Protein_2835 kynureninase -
  D7Y56_RS15740 (D7Y56_15740) - 3197911..3198759 (-) 849 WP_014155398.1 tryptophan 2,3-dioxygenase family protein -
  D7Y56_RS15745 (D7Y56_15745) - 3198918..3199331 (-) 414 WP_014155397.1 DUF3151 domain-containing protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23911.75 Da        Isoelectric Point: 4.8357

>NTDB_id=309637 D7Y56_RS15720 WP_030634746.1 3193689..3194357(-) (vraR) [Streptomyces sp. S501]
MSEALIRVLIVDDQAMVREGFSVLLNAMPGIEVVGEAVDGRQAVSQVKALRPDVVLMDIRMPELNGIDATREIVAADAEA
KVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVASGEALLAPTVTRRLITEFSKIAEAPRPPAMARIGDLT
ERETEVLVLIAQGLSNLEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 669 bp        

>NTDB_id=309637 D7Y56_RS15720 WP_030634746.1 3193689..3194357(-) (vraR) [Streptomyces sp. S501]
ATGAGCGAGGCACTCATCCGCGTCCTGATCGTCGACGACCAGGCGATGGTCCGCGAGGGTTTCTCCGTGCTGCTCAACGC
GATGCCCGGCATCGAGGTCGTCGGCGAGGCCGTCGACGGCCGGCAGGCCGTCTCCCAGGTCAAGGCCCTGCGGCCCGACG
TGGTGCTGATGGACATCCGCATGCCGGAGCTCAACGGCATCGACGCGACCCGTGAGATCGTCGCCGCCGACGCGGAGGCC
AAGGTCCTCGTCCTGACCACGTTCGATCTCGACGAGTACGTGTACCAGGCGCTGCGCGCGGGTGCCTCGGGCTTCCTCCT
GAAGGACGCCTCGGCCCGGCAGCTCGCCGACGGGGTGCGGGTGGTGGCGTCCGGCGAGGCGCTGCTCGCTCCGACGGTGA
CCCGCAGGCTGATCACCGAGTTCTCGAAGATCGCCGAGGCCCCGCGGCCGCCCGCCATGGCCAGGATCGGCGACCTCACC
GAGCGGGAGACGGAGGTGCTCGTGCTGATCGCCCAAGGACTGTCGAACCTGGAGATCGCCTCGCACCTGGTGGTCGCCGA
GTCGACCATCAAGACGCACGTCAGCCGCATCCTGGTGAAACTGGGGCTGCGGGACCGGACCCAGGCGGCGGTGTTCGCCT
ACGAGGCGCGGCTGGTCACGCCCGGATAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory proteins, luxR family (GerE)

(159-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.458

96.396

0.419
  degU Bacillus subtilis subsp. subtilis str. 168

42.396

97.748

0.414