Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D7Y56_RS15615 Genome accession   NZ_CP038147
Coordinates   3171300..3171899 (-) Length   199 a.a.
NCBI ID   WP_014155423.1    Uniprot ID   A0ABZ1K307
Organism   Streptomyces sp. S501     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3166300..3176899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7Y56_RS15595 (D7Y56_15595) - 3166900..3167475 (-) 576 WP_014155427.1 SigE family RNA polymerase sigma factor -
  D7Y56_RS15600 (D7Y56_15600) - 3167835..3168899 (-) 1065 WP_134665472.1 aspartate-semialdehyde dehydrogenase -
  D7Y56_RS15605 (D7Y56_15605) - 3168896..3170167 (-) 1272 WP_014155425.1 aspartate kinase -
  D7Y56_RS15610 (D7Y56_15610) - 3170542..3171201 (-) 660 WP_014155424.1 DUF5063 domain-containing protein -
  D7Y56_RS15615 (D7Y56_15615) recR 3171300..3171899 (-) 600 WP_014155423.1 recombination mediator RecR Machinery gene
  D7Y56_RS15620 (D7Y56_15620) - 3171961..3172299 (-) 339 WP_014155422.1 YbaB/EbfC family nucleoid-associated protein -
  D7Y56_RS15625 (D7Y56_15625) - 3172658..3173446 (+) 789 WP_014155421.1 SLATT domain-containing protein -
  D7Y56_RS15630 (D7Y56_15630) - 3173518..3174168 (-) 651 WP_015577773.1 hypothetical protein -
  D7Y56_RS15635 (D7Y56_15635) - 3174270..3174983 (-) 714 WP_015577774.1 GntR family transcriptional regulator -
  D7Y56_RS15640 (D7Y56_15640) - 3175076..3176449 (-) 1374 WP_041667814.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21915.21 Da        Isoelectric Point: 5.1777

>NTDB_id=309636 D7Y56_RS15615 WP_014155423.1 3171300..3171899(-) (recR) [Streptomyces sp. S501]
MYEGVVQELIDELGRLPGVGPKSAQRIAFHVLQAEPTDVRRLAHALLEVKDKVRFCEICGNVAQQEQCGICRDARRDRSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=309636 D7Y56_RS15615 WP_014155423.1 3171300..3171899(-) (recR) [Streptomyces sp. S501]
TTGTACGAAGGCGTTGTTCAGGAGCTGATCGACGAGCTGGGCAGGCTGCCGGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACGTCCTGCAGGCCGAGCCCACCGACGTGCGCCGTCTGGCCCACGCCCTGCTCGAGGTCAAGGACAAGGTCC
GGTTCTGCGAGATCTGCGGCAACGTCGCGCAGCAGGAGCAGTGCGGGATCTGCCGTGACGCCCGCCGCGACCGCTCGGTG
ATCTGCGTGGTCGAGGAGCCCAAGGACGTCGTCGCGATCGAGCGGACCCGTGAGTTCCGCGGCCGTTACCACGTGCTGGG
CGGCGCGATCAGCCCGATCGAGGGTGTCGGCCCCGACGACCTGCGTATCCGGGAGCTGCTGGCCCGGCTCGCGGACGGCT
CCATCACGGAGCTGATCCTGGCGACGGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTCGCCCGGATGGTCAAG
CCGATGGGCCTGCGGGTCACGCGGCTGGCCAGCGGGCTGCCCGTCGGCGGCGACCTGGAGTACGCCGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGAAGGCGGCTGCTCGATGTGTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452