Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D7Y56_RS07325 Genome accession   NZ_CP038147
Coordinates   1308711..1309355 (-) Length   214 a.a.
NCBI ID   WP_014157025.1    Uniprot ID   A0ABZ1JYH8
Organism   Streptomyces sp. S501     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1303711..1314355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7Y56_RS07295 (D7Y56_07295) - 1303926..1304432 (+) 507 WP_014157031.1 HNH endonuclease -
  D7Y56_RS07300 (D7Y56_07300) - 1304501..1305274 (-) 774 WP_186819385.1 sulfite exporter TauE/SafE family protein -
  D7Y56_RS07305 (D7Y56_07305) - 1305353..1306282 (-) 930 WP_014157029.1 SPFH domain-containing protein -
  D7Y56_RS07310 (D7Y56_07310) - 1306411..1306839 (-) 429 WP_134664754.1 NfeD family protein -
  D7Y56_RS07315 (D7Y56_07315) - 1306905..1307705 (-) 801 WP_014157027.1 ABC transporter ATP-binding protein -
  D7Y56_RS07320 (D7Y56_07320) - 1307826..1308605 (+) 780 WP_134664755.1 hypothetical protein -
  D7Y56_RS07325 (D7Y56_07325) vraR 1308711..1309355 (-) 645 WP_014157025.1 response regulator transcription factor Regulator
  D7Y56_RS07330 (D7Y56_07330) - 1309348..1310492 (-) 1145 Protein_1186 GAF domain-containing sensor histidine kinase -
  D7Y56_RS07335 (D7Y56_07335) - 1310950..1311696 (+) 747 WP_033249954.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23142.39 Da        Isoelectric Point: 5.3843

>NTDB_id=309613 D7Y56_RS07325 WP_014157025.1 1308711..1309355(-) (vraR) [Streptomyces sp. S501]
MADKIIKVLLVDDHQVVRRGLRTFLEIQDDIEVVGEASDGAEGVARTEELRPDVVLMDIKMPGTDGIEALRRLRELENPA
RVLIVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLAQEDTGNGTGRGSTLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGAAG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=309613 D7Y56_RS07325 WP_014157025.1 1308711..1309355(-) (vraR) [Streptomyces sp. S501]
GTGGCTGACAAGATCATCAAGGTGCTGCTGGTCGACGACCACCAGGTCGTCCGCAGGGGACTGCGCACCTTCCTGGAGAT
CCAGGACGACATAGAGGTGGTCGGCGAGGCGTCGGACGGAGCGGAGGGCGTCGCCAGGACCGAGGAGCTGCGGCCCGACG
TGGTCCTCATGGACATCAAGATGCCCGGTACGGACGGCATCGAGGCGCTGCGCAGACTCAGGGAGCTGGAGAACCCCGCC
AGGGTCCTGATCGTCACCAGCTTCACCGAACAGCGCACGGTCGTGCCCGCGCTCCGGGCGGGGGCGTCGGGCTACGTGTA
CAAGGACGTGGACCCGGACGCCCTGGCCGGCGCCATCCGCTCGGTCCACGCGGGGCACGTCCTGCTCCAGCCGGAGGTCG
CGGGCGCGCTGCTGGCCCAGGAGGACACGGGCAACGGCACGGGGCGGGGGAGCACCCTTACCGAGCGGGAACGCGAGGTG
CTCGGACTGATCGCCGACGGCCGCTCCAACCGTGAGATCGCCCGGGCGCTGGTCCTGTCGGAGAAGACGGTGAAGACCCA
CGTCTCCAACATCCTGATGAAGCTCGACCTGTCGGACAGGACCCAGGCCGCGCTCTGGGCGGTCCGGCACGGGGCGGCGG
GCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.66

96.262

0.43
  degU Bacillus subtilis subsp. subtilis str. 168

38.914

100

0.402