Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   E3N82_RS06060 Genome accession   NZ_CP038138
Coordinates   1235201..1235938 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain G3X16-2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1230201..1240938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3N82_RS06030 yfiL 1230359..1230724 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  E3N82_RS06035 aroF 1230934..1232004 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  E3N82_RS06040 tyrA 1232015..1233136 (+) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  E3N82_RS06045 pheA 1233179..1234339 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  E3N82_RS06050 pheL 1234438..1234485 (-) 48 WP_010723158.1 phe operon leader peptide -
  E3N82_RS06055 raiA 1234589..1234930 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  E3N82_RS06060 comL 1235201..1235938 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  E3N82_RS06065 rluD 1236073..1237053 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  E3N82_RS06070 yfiH 1237050..1237781 (+) 732 WP_001402419.1 purine nucleoside phosphorylase YfiH -
  E3N82_RS06075 clpC 1237911..1240484 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=309547 E3N82_RS06060 WP_000197686.1 1235201..1235938(-) (comL) [Escherichia coli strain G3X16-2]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=309547 E3N82_RS06060 WP_000197686.1 1235201..1235938(-) (comL) [Escherichia coli strain G3X16-2]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376