Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DD545_RS05970 Genome accession   NZ_CP031664
Coordinates   1184858..1185730 (+) Length   290 a.a.
NCBI ID   WP_000593193.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 28     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1179858..1190730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DD545_RS05950 (DD545_01078) sucC 1179972..1181138 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  DD545_RS05955 (DD545_01079) sucD 1181160..1182068 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  DD545_RS05960 (DD545_01080) - 1182295..1183413 (+) 1119 WP_001041662.1 LysM peptidoglycan-binding domain-containing protein -
  DD545_RS05965 (DD545_01081) fmhC 1183441..1184685 (+) 1245 WP_070064145.1 FemA/FemB family glycyltransferase FmhC -
  DD545_RS05970 (DD545_01082) dprA 1184858..1185730 (+) 873 WP_000593193.1 DNA-processing protein DprA Machinery gene
  DD545_RS05975 (DD545_01083) topA 1185904..1187979 (+) 2076 WP_001548566.1 type I DNA topoisomerase -
  DD545_RS05980 (DD545_01084) trmFO 1188135..1189442 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33608.02 Da        Isoelectric Point: 9.6024

>NTDB_id=309533 DD545_RS05970 WP_000593193.1 1184858..1185730(+) (dprA) [Staphylococcus aureus strain 28]
MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLRLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=309533 DD545_RS05970 WP_000593193.1 1184858..1185730(+) (dprA) [Staphylococcus aureus strain 28]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACGTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCTGAATATCCACCACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

99.655

100

0.997
  dprA Staphylococcus aureus N315

99.31

100

0.993

Multiple sequence alignment