Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   E3U39_RS21215 Genome accession   NZ_CP038028
Coordinates   4205980..4206600 (+) Length   206 a.a.
NCBI ID   WP_003154004.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4200980..4211600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS21180 (E3U39_21180) - 4201225..4201398 (+) 174 WP_012117647.1 aspartyl-phosphate phosphatase Spo0E family protein -
  E3U39_RS21185 (E3U39_21185) - 4201472..4201690 (-) 219 WP_003153994.1 YneF family protein -
  E3U39_RS21190 (E3U39_21190) sirA 4201776..4202222 (-) 447 WP_003153995.1 sporulation inhibitor of replication protein SirA -
  E3U39_RS21195 (E3U39_21195) recP/tkt 4202374..4204377 (-) 2004 WP_007611727.1 transketolase Machinery gene
  E3U39_RS21200 (E3U39_21200) - 4204544..4204777 (-) 234 WP_003153997.1 DUF896 domain-containing protein -
  E3U39_RS21205 (E3U39_21205) - 4204846..4205496 (-) 651 WP_003153998.1 recombinase family protein -
  E3U39_RS21210 (E3U39_21210) yneA 4205512..4205823 (-) 312 WP_003154001.1 cell division suppressor protein YneA -
  E3U39_RS21215 (E3U39_21215) dinR/lexA 4205980..4206600 (+) 621 WP_003154004.1 transcriptional repressor LexA Regulator
  E3U39_RS21220 (E3U39_21220) - 4206941..4207369 (-) 429 WP_053573359.1 hypothetical protein -
  E3U39_RS21225 (E3U39_21225) - 4207523..4207972 (+) 450 WP_003154009.1 YndM family protein -
  E3U39_RS21230 (E3U39_21230) - 4208000..4208830 (-) 831 WP_003154011.1 prohibitin family protein -
  E3U39_RS21635 - 4208817..4208966 (-) 150 WP_007410334.1 hypothetical protein -
  E3U39_RS21235 (E3U39_21235) - 4209075..4209896 (-) 822 WP_053573360.1 poly-gamma-glutamate hydrolase family protein -
  E3U39_RS21870 (E3U39_21240) - 4210108..4210214 (+) 107 Protein_4105 DUF4177 domain-containing protein -
  E3U39_RS21245 (E3U39_21245) - 4210302..4210736 (-) 435 WP_003154017.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23055.65 Da        Isoelectric Point: 5.3816

>NTDB_id=309520 E3U39_RS21215 WP_003154004.1 4205980..4206600(+) (dinR/lexA) [Bacillus amyloliquefaciens strain FS1092]
MTKLSKRQLDILRFIKEEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEVLDEEEVHIPKSQ
VVNVPVIGKVTAGIPITAVENIDEYFPLPDRMVPPGEHVFMLEIMGESMIDAGIFDKDYVIVKQQNTANNGEIVVAMTED
DEATVKRFYKEDNYVRLQPENPTMEPIILQNVSILGKVIGVFRAVH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=309520 E3U39_RS21215 WP_003154004.1 4205980..4206600(+) (dinR/lexA) [Bacillus amyloliquefaciens strain FS1092]
ATGACGAAGCTATCAAAAAGGCAGCTTGATATCCTGCGTTTTATTAAAGAAGAGGTAAAAACGAAAGGATATCCGCCTTC
TGTAAGAGAGATAGGAGAAGCAGTAGGACTGGCTTCCAGTTCAACCGTGCACGGCCATTTGGCGCGGCTGGAGACAAAAG
GCCTGATCAGACGGGACCCAACTAAACCGAGGGCGATTGAGGTATTGGATGAAGAAGAAGTCCACATTCCGAAAAGCCAG
GTCGTAAACGTTCCGGTCATCGGGAAAGTGACGGCGGGTATTCCGATTACGGCTGTTGAAAATATCGACGAGTATTTTCC
GCTTCCTGACCGGATGGTTCCTCCGGGCGAACATGTCTTTATGTTAGAAATCATGGGAGAAAGTATGATCGACGCCGGTA
TTTTTGACAAAGATTACGTCATTGTCAAACAGCAGAACACGGCCAATAACGGAGAAATCGTCGTAGCTATGACCGAAGAT
GATGAAGCGACGGTCAAGCGCTTCTATAAAGAAGACAATTATGTACGGCTGCAGCCGGAAAATCCGACGATGGAGCCGAT
TATCCTGCAAAACGTAAGCATTTTGGGGAAAGTTATCGGCGTATTCAGAGCCGTACATTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(85-199)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

92.718

100

0.927

Multiple sequence alignment