Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   E3U39_RS15860 Genome accession   NZ_CP038028
Coordinates   3172270..3174042 (+) Length   590 a.a.
NCBI ID   WP_053573145.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3167270..3179042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS15835 (E3U39_15835) - 3167381..3168160 (+) 780 WP_053573143.1 enoyl-CoA hydratase -
  E3U39_RS15840 (E3U39_15840) - 3168174..3168947 (+) 774 WP_007408121.1 electron transfer flavoprotein subunit beta/FixA family protein -
  E3U39_RS15845 (E3U39_15845) - 3168979..3169956 (+) 978 WP_015417950.1 electron transfer flavoprotein subunit alpha/FixB family protein -
  E3U39_RS15850 (E3U39_15850) - 3170170..3171660 (+) 1491 WP_053573144.1 alpha-N-arabinofuranosidase -
  E3U39_RS15855 (E3U39_15855) trxA 3171813..3172127 (+) 315 WP_003152560.1 thioredoxin -
  E3U39_RS15860 (E3U39_15860) uvrC 3172270..3174042 (+) 1773 WP_053573145.1 excinuclease ABC subunit UvrC Machinery gene
  E3U39_RS15870 (E3U39_15870) - 3174409..3175638 (+) 1230 WP_007408127.1 aspartate kinase -
  E3U39_RS15875 (E3U39_15875) - 3175685..3176131 (-) 447 WP_007612940.1 YslB family protein -
  E3U39_RS15880 (E3U39_15880) sdhC 3176428..3177036 (+) 609 WP_003152571.1 succinate dehydrogenase cytochrome B558 -
  E3U39_RS15885 (E3U39_15885) sdhA 3177070..3178830 (+) 1761 WP_003152573.1 succinate dehydrogenase flavoprotein subunit -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68225.10 Da        Isoelectric Point: 9.5628

>NTDB_id=309486 E3U39_RS15860 WP_053573145.1 3172270..3174042(+) (uvrC) [Bacillus amyloliquefaciens strain FS1092]
MNKQLKEKLALLPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKYDPKYNVMLKDDKTYPFIKITHERHPRLIVTRNVKKDKGSYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNREIVEDITRFLKGGHNEIKKELEAKMAEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMN
DLLDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTFIGQFYSKNNHFLPKEILVPDSVDRDMITEL
LETAVHQPKKGPKKELLLLAHKNAKIALREKFSLIERDEERSIGAAERLGEALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPNKKEYRKYKIKTVTGPDDYGSMREVVRRRYTRVLRENLPLPDLIIIDGGKGQINAARDVLENELGLDVPVAGLA
KDDKHRTSNLLIGDPLEPVLLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLDDIKKAGVPAAAAQLLFEKLKK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=309486 E3U39_RS15860 WP_053573145.1 3172270..3174042(+) (uvrC) [Bacillus amyloliquefaciens strain FS1092]
ATGAATAAACAACTGAAAGAAAAACTGGCCCTCCTTCCCGATCAGCCGGGCTGTTATTTAATGAAAGACCGTCAAAAAAC
AGTCATCTACGTGGGGAAAGCGAAAGTCTTGAAAAACAGGGTGCGATCTTATTTCACCGGTTCTCACGACGCAAAAACCC
AACGGCTTGTGACGGAGATTGAGGACTTTGAATATATCGTGACTTCCTCCAATCTTGAAGCGCTTATTTTGGAAATGAAT
CTGATTAAAAAATACGATCCGAAATACAATGTCATGCTGAAAGATGATAAAACCTATCCCTTTATTAAAATCACCCATGA
ACGCCATCCGCGGCTGATTGTCACCCGGAATGTCAAAAAAGACAAAGGAAGCTATTTCGGCCCGTATCCGAATGTGCAGG
CGGCGCGGGAAACGAAAAAACTGCTGGACCGCCTTTACCCGCTCAGGAAATGCTCAAAGCTTCCGGACCGCGTCTGTCTC
TATTATCATCTCGGACAATGCCTTGCCCCATGTGTAAAGGATATATCTGAGGAGACAAACCGCGAGATTGTTGAAGACAT
TACCCGTTTTTTAAAGGGAGGGCATAACGAAATCAAAAAAGAGCTCGAAGCGAAAATGGCAGAAGCGGCGGAAAAGCTTG
AATTTGAACGGGCTAAAGAATTCCGCGACCAGCTTGCTCACATCGAATCGACGATGGAGAAGCAAAAAATGACCATGAAT
GACCTTCTGGACCGCGATGTGTTTGCATATGCCTACGATAAAGGCTGGATGTGCGTCCAAGTCTTTTTCATACGCCAAGG
AAAACTGATCGAACGTGACGTCAGCATGTTTCCGATGTATCAGGAAGCGGATGAAGAATTTCTGACCTTCATCGGCCAGT
TCTACTCTAAAAACAATCACTTTCTGCCTAAGGAAATTCTGGTGCCTGACAGCGTTGACAGGGACATGATCACCGAGCTG
TTGGAAACCGCCGTGCATCAGCCGAAAAAAGGCCCGAAAAAAGAGCTGCTTTTGCTTGCGCACAAAAATGCGAAAATCGC
CCTGCGGGAAAAATTTTCGTTAATCGAGCGGGATGAGGAACGGTCAATCGGTGCAGCCGAACGGCTCGGCGAAGCGCTGA
ATATTTACACGCCGCATCGGATTGAAGCGTTTGACAACTCCAATATTCAAGGCACAAACCCCGTATCGGCCATGATTGTC
TTTATTGACGGAAAACCGAATAAAAAGGAATACCGCAAATATAAAATTAAAACCGTAACAGGGCCTGATGATTACGGCTC
AATGAGGGAAGTCGTCAGAAGAAGATACACGAGGGTGCTTCGCGAAAATCTTCCGCTGCCGGATTTAATCATCATTGACG
GCGGAAAAGGCCAGATTAACGCGGCGCGCGACGTGCTCGAGAATGAGCTCGGTCTTGATGTCCCGGTAGCGGGATTGGCG
AAAGATGATAAACACCGAACATCCAACCTTTTGATCGGCGACCCGCTTGAACCGGTGTTGCTGGAGCGGAACAGCCAAGA
GTTTTACCTGCTTCAGCGTATTCAGGACGAAGTTCACCGTTTTGCGATCAGCTTTCACAGACAGATCCGGGGAAAAAGCG
CCTTTCAATCCGTTCTGGATGATATCCCCGGAATCGGCGAAAAACGCAAAAAAATGCTCTTAAAACATTTCGGATCTGTC
AAAAAGATGAAGGAAGCAAGCCTTGACGATATCAAAAAAGCGGGTGTGCCGGCCGCGGCGGCCCAGCTGCTGTTTGAAAA
ATTAAAAAAATAG

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)

UvrB/uvrC motif (UVR)

(198-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.694

99.661

0.595
  uvrC Streptococcus pneumoniae R6

59.354

99.661

0.592
  uvrC Streptococcus pneumoniae D39

59.354

99.661

0.592