Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   E3U39_RS09085 Genome accession   NZ_CP038028
Coordinates   1837506..1838102 (-) Length   198 a.a.
NCBI ID   WP_007615147.1    Uniprot ID   A0A150F6G9
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1832506..1843102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS09075 (E3U39_09075) - 1836939..1837202 (-) 264 WP_003150686.1 pro-sigmaK processing inhibitor BofA family protein -
  E3U39_RS09080 (E3U39_09080) - 1837263..1837487 (-) 225 WP_007408755.1 YaaL family protein -
  E3U39_RS09085 (E3U39_09085) recR 1837506..1838102 (-) 597 WP_007615147.1 recombination protein RecR Machinery gene
  E3U39_RS09090 (E3U39_09090) - 1838117..1838440 (-) 324 WP_007408754.1 YbaB/EbfC family nucleoid-associated protein -
  E3U39_RS09095 (E3U39_09095) dnaX 1838465..1840156 (-) 1692 WP_011996162.1 DNA polymerase III subunit gamma/tau -
  E3U39_RS09105 (E3U39_09105) tadA 1840639..1841121 (-) 483 WP_015416644.1 tRNA adenosine(34) deaminase TadA -
  E3U39_RS09110 (E3U39_09110) - 1841204..1841755 (+) 552 WP_031379343.1 isochorismatase family cysteine hydrolase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21988.56 Da        Isoelectric Point: 5.3504

>NTDB_id=309443 E3U39_RS09085 WP_007615147.1 1837506..1838102(-) (recR) [Bacillus amyloliquefaciens strain FS1092]
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDVVLDFAKALVNAKRNLTYCSICGHITDQDPCYICEDTRRDKS
VICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLL
KPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=309443 E3U39_RS09085 WP_007615147.1 1837506..1838102(-) (recR) [Bacillus amyloliquefaciens strain FS1092]
ATGCAGTATCCTGAACCAATATCAAAGCTGATTGACAGCTTTATGAAATTGCCAGGGATCGGACCGAAAACAGCGGTTCG
TCTGGCTTTTTTTGTTCTAGGTATGAAAGAAGACGTGGTATTAGATTTCGCGAAAGCATTAGTAAATGCGAAGCGCAACC
TGACATATTGTTCGATTTGCGGACATATAACAGATCAAGACCCTTGTTATATATGTGAGGACACAAGAAGGGATAAGTCT
GTTATTTGTGTCGTGCAGGACCCTAAGGATGTGATCGCAATGGAGAAAATGAAGGAATATAACGGCCAGTATCATGTTCT
TCACGGCGCGATTTCACCAATGGACGGCATCGGCCCGGAGGATATTAAGATTCCGGAGCTGCTGAAACGTCTTCAGGATG
ATCAAGTGACAGAAGTTATTCTCGCAACCAACCCTAATATTGAAGGGGAAGCAACAGCGATGTATATATCAAGGCTGTTA
AAGCCCTCAGGCATCAAGCTCTCCCGTATTGCCCACGGTCTGCCCGTCGGCGGTGATTTGGAATATGCTGATGAGGTCAC
TCTTTCAAAAGCTCTTGAAGGAAGACGTGAATTGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150F6G9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

99.495

100

0.995
  recR Streptococcus pneumoniae R6

62.626

100

0.626
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.551

98.99

0.52