Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   DZ894_RS11140 Genome accession   NZ_CP031659
Coordinates   2272537..2273172 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain PABL012     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2267537..2278172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DZ894_RS11125 (DZ894_11125) - 2268243..2269487 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  DZ894_RS11130 (DZ894_11130) - 2269575..2270108 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  DZ894_RS11135 (DZ894_11135) comA 2270239..2272464 (+) 2226 WP_023115230.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DZ894_RS11140 (DZ894_11140) exbB 2272537..2273172 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DZ894_RS11145 (DZ894_11145) - 2273169..2273609 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  DZ894_RS11150 (DZ894_11150) lpxK 2273609..2274607 (+) 999 WP_112302940.1 tetraacyldisaccharide 4'-kinase -
  DZ894_RS11155 (DZ894_11155) - 2274645..2274830 (+) 186 WP_003091157.1 Trm112 family protein -
  DZ894_RS11160 (DZ894_11160) kdsB 2274830..2275594 (+) 765 WP_003130694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DZ894_RS11165 (DZ894_11165) - 2275594..2276058 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  DZ894_RS11170 (DZ894_11170) murB 2276055..2277074 (+) 1020 WP_003106928.1 UDP-N-acetylmuramate dehydrogenase -
  DZ894_RS11175 (DZ894_11175) - 2277259..2277552 (+) 294 WP_112302939.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=309423 DZ894_RS11140 WP_003091163.1 2272537..2273172(+) (exbB) [Pseudomonas aeruginosa strain PABL012]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=309423 DZ894_RS11140 WP_003091163.1 2272537..2273172(+) (exbB) [Pseudomonas aeruginosa strain PABL012]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCTTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment