Detailed information NTG0309422

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: E3U39_RS06600
• Genome accession: NZ_CP038028
• Coordinates: 1331983..1333161 (-)
• Length: 392 a.a.
• NCBI ID: WP_053573663.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain FS1092
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1326983..1338161

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E3U39_RS06585 (E3U39_06585)	-	1327233..1328636 (-)	1404	WP_021495073.1	MFS transporter	-
E3U39_RS21735	-	1328675..1329076 (-)	402	Protein_1277	BCCT family transporter	-
E3U39_RS21740	-	1329823..1329951 (-)	129	WP_223204396.1	hypothetical protein	-
E3U39_RS21480	-	1329908..1330063 (-)	156	Protein_1279	tetratricopeptide repeat protein	-
E3U39_RS06595 (E3U39_06595)	-	1330525..1331802 (-)	1278	WP_053573662.1	hypothetical protein	-
E3U39_RS06600 (E3U39_06600)	rapC	1331983..1333161 (-)	1179	WP_053573663.1	RapH N-terminal domain-containing protein	Regulator
E3U39_RS06605 (E3U39_06605)	-	1333364..1333468 (-)	105	Protein_1282	NAD-dependent epimerase/dehydratase family protein	-
E3U39_RS06610 (E3U39_06610)	-	1333477..1334118 (-)	642	WP_053573664.1	NAD(P)H-dependent oxidoreductase	-
E3U39_RS06615 (E3U39_06615)	-	1334315..1334818 (+)	504	WP_004393007.1	Rrf2 family transcriptional regulator	-
E3U39_RS21655	-	1335280..1335546 (+)	267	WP_199910799.1	TQO small subunit DoxD	-
E3U39_RS06625 (E3U39_06625)	-	1335617..1335775 (-)	159	Protein_1286	hypothetical protein	-
E3U39_RS06630 (E3U39_06630)	-	1336373..1336822 (+)	450	WP_053573666.1	hypothetical protein	-

Sequence

Protein

• Length: 392 a.a.
• Molecular weight: 46618.90 Da
• Isoelectric Point: 4.7518

>NTDB_id=309422 E3U39_RS06600 WP_053573663.1 1331983..1333161(-) (rapC) [Bacillus amyloliquefaciens strain FS1092]
MHRILLDENRKIPYDLVTQKLNDWYTLIKNDQVEQAEHIRKEVEKELVNLEENQDALLYYQLLEFRHEIMLSYMESKRID
DLNSAYETIKEMEEQGQLTGMLEYYFFFFTGMYEFRRKELTTAISAYRIAETKLSEVEDEIEKAEFFFKVSYVYYYMKQT
YFSMNYASRALKIFQKFDEYAVQTLRCQFIVAGNLIDSLEFERALQQFLNALEIAEYTKIPHLIGMSHMNIGICYEELKD
YNNASIHLGLSIDIFEKSKHSFLTKALFAMAHVYAKKHNFDIAYNYFIKGRSEAENRNDKEYIAKFKILEGLYFSNGEYE
LIDEAFSYLADRKMFADMENFATEIGDYFYGEGELELSNKFYRMSIEARRKIKRGEIINEDQPNSIGSNGVE

Nucleotide

• Length: 1179 bp

>NTDB_id=309422 E3U39_RS06600 WP_053573663.1 1331983..1333161(-) (rapC) [Bacillus amyloliquefaciens strain FS1092]
TTGCACCGGATTCTCTTGGATGAAAACAGAAAAATTCCGTACGACCTAGTCACTCAAAAATTGAATGATTGGTATACTCT
TATTAAAAATGATCAAGTTGAACAGGCTGAGCATATAAGAAAAGAAGTGGAAAAAGAATTAGTGAATCTGGAAGAAAATC
AAGACGCTTTGTTATACTATCAATTGCTTGAATTCCGACACGAGATAATGTTGAGTTATATGGAATCGAAAAGGATTGAT
GATTTAAATAGTGCGTATGAAACAATAAAAGAAATGGAAGAGCAAGGGCAATTAACGGGTATGCTTGAGTATTACTTTTT
CTTTTTTACAGGTATGTACGAGTTCAGACGTAAAGAATTAACAACGGCAATAAGTGCTTATAGGATTGCTGAAACAAAAC
TTTCTGAAGTGGAAGATGAAATAGAAAAAGCTGAGTTTTTTTTCAAAGTTTCATACGTTTATTATTATATGAAACAGACT
TACTTTTCGATGAATTATGCTAGTCGTGCTTTGAAAATATTTCAGAAGTTCGATGAATACGCTGTTCAAACATTGCGCTG
TCAGTTTATAGTAGCAGGAAATTTGATAGATTCTTTGGAATTTGAAAGAGCGTTGCAACAATTTTTGAATGCATTGGAAA
TTGCAGAGTACACCAAAATTCCTCATCTGATTGGTATGTCTCATATGAACATTGGGATTTGTTATGAAGAGTTAAAGGAT
TATAATAATGCTTCTATCCATTTGGGATTGTCGATAGATATTTTTGAAAAATCTAAACATAGTTTTTTGACAAAAGCTTT
GTTTGCTATGGCTCACGTATATGCCAAAAAACATAATTTTGATATAGCTTATAATTATTTCATTAAAGGACGAAGCGAAG
CAGAGAATAGGAATGATAAAGAATACATTGCAAAATTTAAAATTTTAGAAGGACTTTATTTTTCAAATGGTGAATATGAA
TTAATTGATGAAGCATTTTCTTACCTTGCTGACAGAAAAATGTTTGCTGACATGGAGAATTTTGCAACTGAAATAGGCGA
TTATTTTTATGGAGAAGGGGAATTAGAACTTTCAAACAAATTTTATCGTATGAGTATTGAAGCAAGACGAAAAATCAAAA
GAGGGGAGATTATTAATGAAGATCAGCCGAATTCTATTGGGAGTAATGGTGTTGAGTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (11-71)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.666	96.173	0.362