Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   SSUSC84_RS08700 Genome accession   NC_012924
Coordinates   1752674..1753714 (-) Length   346 a.a.
NCBI ID   WP_012027749.1    Uniprot ID   -
Organism   Streptococcus suis SC84     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1747674..1758714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUSC84_RS08670 (SSUSC84_1668) - 1748330..1748638 (-) 309 WP_012027746.1 YlxQ-related RNA-binding protein -
  SSUSC84_RS08675 (SSUSC84_1669) rnpM 1748625..1748921 (-) 297 WP_002942375.1 RNase P modulator RnpM -
  SSUSC84_RS08680 (SSUSC84_1670) nusA 1748938..1750080 (-) 1143 WP_004194726.1 transcription termination factor NusA -
  SSUSC84_RS08685 (SSUSC84_1671) rimP 1750154..1750624 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  SSUSC84_RS08690 (SSUSC84_1672) trmB 1751195..1751833 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SSUSC84_RS08695 (SSUSC84_1673) ccrZ 1751830..1752624 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  SSUSC84_RS08700 (SSUSC84_1674) pptB 1752674..1753714 (-) 1041 WP_012027749.1 ABC transporter permease Regulator
  SSUSC84_RS08705 (SSUSC84_1675) pptA 1753711..1754445 (-) 735 WP_012027751.1 ABC transporter ATP-binding protein Regulator
  SSUSC84_RS08710 (SSUSC84_1676) - 1754508..1754921 (+) 414 WP_012027752.1 HIT family protein -
  SSUSC84_RS08715 (SSUSC84_1677) - 1754923..1755225 (+) 303 WP_012027753.1 methyl-accepting chemotaxis protein -
  SSUSC84_RS08720 (SSUSC84_1678) - 1755334..1756527 (-) 1194 WP_012027754.1 LCP family protein -
  SSUSC84_RS08725 (SSUSC84_1679) - 1756524..1757051 (-) 528 WP_012027755.1 GNAT family N-acetyltransferase -
  SSUSC84_RS08730 (SSUSC84_1680) tsaE 1757044..1757484 (-) 441 WP_012775330.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 40147.52 Da        Isoelectric Point: 10.1278

>NTDB_id=30942 SSUSC84_RS08700 WP_012027749.1 1752674..1753714(-) (pptB) [Streptococcus suis SC84]
MKELFQQRRLDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYRQLLLSFPENPLPIVLVVIAISLLVLLSGRIATYLEE
ADQIFLLTKEKDILQGLEVAARRTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVSGLLTLLVLKCLFVKRQLVAYQSQGV
LDWSKAIQDEQKRKQSILRFFALFTTVKGIGTTVKPRSYLNGILRLVKSRQTWFYLYLRAFLRSGDYLGLTIRLLLLAIL
SLFAIEESWLSIGLVLVFHYLLVFQLLGLYKHYDYQYITQLYPLEKDSKKIGLQNLLRVILYSLLVVELGFALLFSKENA
MVVVLLLVGIFLHEIYLPLKLKKLID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=30942 SSUSC84_RS08700 WP_012027749.1 1752674..1753714(-) (pptB) [Streptococcus suis SC84]
ATGAAAGAATTGTTTCAACAACGCCGACTAGATTTTTTAAATCGTTGTTCCAAGTATCTGCGCTATGTTCTGAATGACCA
TTTTGTTTTGGTTCTCATGGTTTTATTAGGCTTTTTGAGTTTGCAATATCGTCAATTATTGTTGTCATTCCCTGAGAATC
CGTTGCCGATTGTTTTGGTGGTTATTGCAATCAGTCTACTGGTGCTATTGTCCGGAAGAATTGCGACTTATTTAGAAGAA
GCTGATCAAATCTTCCTATTGACCAAGGAAAAAGACATTCTGCAAGGACTCGAGGTTGCAGCCAGACGCACGGTCTTGTT
TTGGTCCTCTATACAGGTGGTGGTTCAGCTTGTTTTGTTACCAATCTATTTGAAACTGGGTTTACCGGTGTGGATGATTG
TATCTGGTCTTCTTACTTTGTTGGTTTTAAAATGTCTTTTTGTCAAGCGCCAATTAGTGGCTTATCAGTCACAGGGAGTA
TTGGACTGGTCTAAGGCTATTCAAGATGAACAAAAAAGGAAACAGTCTATTTTACGTTTCTTTGCCTTATTTACAACGGT
TAAAGGAATCGGTACGACTGTTAAACCGAGAAGCTATCTCAATGGAATCTTGCGTCTCGTCAAGTCGAGACAGACTTGGT
TTTATCTCTACTTACGGGCTTTCTTGCGTTCAGGAGACTACTTGGGCTTGACGATACGTCTACTGTTGTTGGCGATTTTG
TCCCTATTTGCCATTGAAGAATCGTGGTTATCCATCGGCCTAGTTTTAGTCTTTCATTATTTGCTTGTCTTCCAGTTGTT
GGGGCTTTACAAGCATTATGATTATCAATATATAACACAACTGTATCCTCTGGAGAAAGATTCCAAGAAAATTGGTCTTC
AGAATTTGCTTAGAGTGATTTTATATAGTCTATTAGTAGTGGAATTGGGCTTTGCTCTGCTATTTTCTAAAGAGAATGCG
ATGGTAGTCGTCTTACTTCTCGTGGGGATTTTCTTGCATGAAATATATTTGCCTCTAAAATTAAAAAAATTGATTGACTA
A

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-158)

Bacterial ABC transporter protein EcsB (EcsB)

(154-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

46.023

100

0.468
  pptB Streptococcus thermophilus LMD-9

45.455

100

0.462

Multiple sequence alignment