Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DY470_RS10900 Genome accession   NZ_CP031642
Coordinates   2044405..2044743 (+) Length   112 a.a.
NCBI ID   WP_062921637.1    Uniprot ID   -
Organism   Bacillus anthracis strain MCCC 1A02161     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2039405..2049743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DY470_RS10875 (DY470_10875) - 2039663..2040430 (-) 768 WP_071736262.1 hypothetical protein -
  DY470_RS10880 (DY470_10880) - 2040540..2041187 (+) 648 WP_071736263.1 HD domain-containing protein -
  DY470_RS10885 (DY470_10885) - 2041184..2043079 (+) 1896 WP_000783208.1 ABC-F family ATP-binding cassette domain-containing protein -
  DY470_RS10890 (DY470_10890) - 2043155..2043886 (+) 732 WP_001260645.1 Bax inhibitor-1/YccA family protein -
  DY470_RS10895 (DY470_10895) - 2043992..2044246 (+) 255 WP_017561864.1 DUF4318 domain-containing protein -
  DY470_RS10900 (DY470_10900) ssb 2044405..2044743 (+) 339 WP_062921637.1 single-stranded DNA-binding protein Machinery gene
  DY470_RS10905 (DY470_10905) - 2044769..2045359 (-) 591 WP_000943167.1 TetR/AcrR family transcriptional regulator -
  DY470_RS10910 (DY470_10910) - 2045461..2046594 (-) 1134 WP_001066849.1 FAD-dependent oxidoreductase -
  DY470_RS10915 (DY470_10915) - 2046853..2047980 (+) 1128 WP_000692577.1 conserved virulence factor C family protein -
  DY470_RS10920 (DY470_10920) - 2047984..2048367 (+) 384 WP_000634906.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  DY470_RS10925 (DY470_10925) - 2048451..2048885 (+) 435 WP_000063713.1 BrxA/BrxB family bacilliredoxin -
  DY470_RS10930 (DY470_10930) - 2048935..2049711 (+) 777 WP_071736264.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12920.81 Da        Isoelectric Point: 9.4347

>NTDB_id=309289 DY470_RS10900 WP_062921637.1 2044405..2044743(+) (ssb) [Bacillus anthracis strain MCCC 1A02161]
MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIHTR
NYEDDQGKRIYITEVVIESITFLERRREGASQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=309289 DY470_RS10900 WP_062921637.1 2044405..2044743(+) (ssb) [Bacillus anthracis strain MCCC 1A02161]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCGTATGC
ACGAGTATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTAGATTTTATTAATTGTGTCGTAT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAAGGGTCTCTTGTTGGAATTACCGGACGTATTCATACGAGG
AATTACGAGGATGATCAAGGAAAGAGAATATATATAACGGAAGTCGTGATTGAGAGCATTACATTTTTGGAGAGAAGGCG
CGAAGGTGCATCGCAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

53.782

100

0.571
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

94.643

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.327

100

0.518
  ssbB Lactococcus lactis subsp. cremoris KW2

48.571

93.75

0.455
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.455

98.214

0.446
  ssbA Streptococcus mutans UA159

43.636

98.214

0.429
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.818

98.214

0.411
  ssbB/cilA Streptococcus mitis NCTC 12261

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae D39

40.909

98.214

0.402
  ssbB/cilA Streptococcus pneumoniae R6

40.909

98.214

0.402
  ssbB/cilA Streptococcus pneumoniae Rx1

40.909

98.214

0.402
  ssbB/cilA Streptococcus mitis SK321

40.909

98.214

0.402

Multiple sequence alignment