Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   E3C75_RS05650 Genome accession   NZ_CP038020
Coordinates   1072099..1072695 (+) Length   198 a.a.
NCBI ID   WP_011225694.1    Uniprot ID   P96053
Organism   Streptococcus thermophilus strain ATCC 19258     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1067099..1077695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3C75_RS05625 - 1067233..1067445 (+) 213 WP_084828597.1 lysophospholipase -
  E3C75_RS05630 - 1067694..1067885 (+) 192 WP_002950214.1 hypothetical protein -
  E3C75_RS05635 - 1068059..1068913 (+) 855 WP_111679416.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  E3C75_RS05640 - 1068917..1069753 (+) 837 WP_111679418.1 NAD(P)H-hydrate dehydratase -
  E3C75_RS05645 pbp2b 1069875..1071989 (+) 2115 WP_111679420.1 penicillin-binding protein PBP2B -
  E3C75_RS05650 recR 1072099..1072695 (+) 597 WP_011225694.1 recombination mediator RecR Machinery gene
  E3C75_RS11125 - 1072837..1073636 (+) 800 Protein_1071 PRD domain-containing protein -
  E3C75_RS05665 ybeY 1073856..1074353 (+) 498 WP_100262183.1 rRNA maturation RNase YbeY -
  E3C75_RS05670 - 1074334..1074738 (+) 405 WP_002946201.1 diacylglycerol kinase family protein -
  E3C75_RS05675 era 1074757..1075656 (+) 900 WP_002950226.1 GTPase Era -
  E3C75_RS05680 mutM 1075703..1076524 (+) 822 WP_024009805.1 DNA-formamidopyrimidine glycosylase -
  E3C75_RS05685 coaE 1076521..1077114 (+) 594 WP_014621355.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21767.98 Da        Isoelectric Point: 4.5326

>NTDB_id=309237 E3C75_RS05650 WP_011225694.1 1072099..1072695(+) (recR) [Streptococcus thermophilus strain ATCC 19258]
MLYPTPIAKLIDSFSKLPGIGAKTATRLAFYTISMSDEDVNDFAKNLLAAKRELTYCSVCGRLTDDDPCIICTDETRDRT
KILVVEDSKDVSAMEKIQEYRGLYHVLQGLISPMNGVGPDDINLKSLITRLMDSEVDEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=309237 E3C75_RS05650 WP_011225694.1 1072099..1072695(+) (recR) [Streptococcus thermophilus strain ATCC 19258]
ATGCTTTATCCTACTCCAATTGCTAAACTGATTGATAGTTTTTCAAAACTTCCAGGAATTGGGGCTAAGACGGCGACACG
TCTGGCTTTCTATACCATCAGCATGTCTGATGAAGATGTTAATGATTTTGCAAAAAATCTTTTAGCAGCAAAACGTGAGT
TGACCTATTGTTCAGTTTGTGGTCGCTTGACTGATGATGACCCATGTATTATTTGTACGGATGAAACTAGAGACCGTACT
AAGATTTTGGTTGTTGAGGACTCCAAAGATGTTTCTGCTATGGAAAAGATTCAGGAATATCGTGGTCTCTACCATGTGCT
TCAAGGGCTTATCTCCCCTATGAATGGTGTTGGACCAGATGATATTAATTTAAAAAGTTTGATTACCCGTCTTATGGATA
GCGAGGTTGACGAGGTCATCATCGCAACTAATGCAACGGCCGATGGTGAGGCAACCTCTATGTATATTTCACGGGTCCTC
AAACCTGCAGGTATTAAGGTGACCCGCCTAGCACGTGGGCTGGCTGTTGGTTCTGACATCGAGTACGCTGATGAAGTAAC
CTTGCTAAGAGCCATCGAGAATCGAACAGAACTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P96053

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475

Multiple sequence alignment