Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPSH_RS07120 | Genome accession | NC_010698 |
| Coordinates | 1466257..1466832 (-) | Length | 191 a.a. |
| NCBI ID | WP_001203561.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Shi470 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1461257..1471832
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSH_RS08440 (HPSH_07535) | - | 1462962..1463513 (-) | 552 | WP_411155702.1 | restriction endonuclease subunit S | - |
| HPSH_RS08445 | - | 1463549..1464214 (-) | 666 | WP_195154836.1 | restriction endonuclease subunit S | - |
| HPSH_RS07115 (HPSH_07540) | - | 1464194..1466224 (-) | 2031 | Protein_1382 | class I SAM-dependent DNA methyltransferase | - |
| HPSH_RS07120 (HPSH_07545) | comFC | 1466257..1466832 (-) | 576 | WP_001203561.1 | ComF family protein | Machinery gene |
| HPSH_RS07125 (HPSH_07550) | tmk | 1466820..1467395 (-) | 576 | WP_000289747.1 | dTMP kinase | - |
| HPSH_RS07130 (HPSH_07555) | coaD | 1467397..1467870 (-) | 474 | WP_001169286.1 | pantetheine-phosphate adenylyltransferase | - |
| HPSH_RS07135 (HPSH_07560) | - | 1467870..1468433 (-) | 564 | WP_000780116.1 | UbiX family flavin prenyltransferase | - |
| HPSH_RS07140 (HPSH_07570) | flgA | 1468443..1469099 (-) | 657 | WP_000697667.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPSH_RS07145 (HPSH_07575) | uvrD | 1469096..1471141 (-) | 2046 | WP_000345164.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21267.87 Da Isoelectric Point: 9.0940
>NTDB_id=30923 HPSH_RS07120 WP_001203561.1 1466257..1466832(-) (comFC) [Helicobacter pylori Shi470]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSLKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRASNAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSLKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRASNAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=30923 HPSH_RS07120 WP_001203561.1 1466257..1466832(-) (comFC) [Helicobacter pylori Shi470]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCTAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTTCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCTAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTTCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |