Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   E3C75_RS01865 Genome accession   NZ_CP038020
Coordinates   349091..350191 (+) Length   366 a.a.
NCBI ID   WP_111679762.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ATCC 19258     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 344091..355191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3C75_RS01840 pgsA 344630..345172 (-) 543 WP_084826205.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  E3C75_RS01845 - 345185..346042 (-) 858 WP_084829187.1 helix-turn-helix domain-containing protein -
  E3C75_RS01850 - 346101..347381 (-) 1281 WP_133264060.1 pitrilysin family protein -
  E3C75_RS01855 - 347383..348633 (-) 1251 WP_111679761.1 pitrilysin family protein -
  E3C75_RS01860 yaaA 348711..349088 (+) 378 WP_084829189.1 S4 domain-containing protein YaaA -
  E3C75_RS01865 recF 349091..350191 (+) 1101 WP_111679762.1 DNA replication/repair protein RecF Machinery gene
  E3C75_RS01870 guaB 350360..351841 (-) 1482 WP_111679763.1 IMP dehydrogenase -
  E3C75_RS01875 trpS 352018..353040 (-) 1023 WP_002952292.1 tryptophan--tRNA ligase -
  E3C75_RS01880 - 353468..354340 (+) 873 Protein_371 YitT family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 42206.32 Da        Isoelectric Point: 8.9610

>NTDB_id=309194 E3C75_RS01865 WP_111679762.1 349091..350191(+) (recF) [Streptococcus thermophilus strain ATCC 19258]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVRRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLRFYINDMNASFGSQGQQRSLILSLKMAEIALVKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=309194 E3C75_RS01865 WP_111679762.1 349091..350191(+) (recF) [Streptococcus thermophilus strain ATCC 19258]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCGTCGTCATAGTGGAAAT
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTTAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAGCTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAGATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTGGTTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACGACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

65.642

97.814

0.642
  recF Bacillus subtilis subsp. subtilis str. 168

42.663

100

0.429

Multiple sequence alignment