Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPSH_RS01645 Genome accession   NC_010698
Coordinates   331314..331718 (+) Length   134 a.a.
NCBI ID   WP_000599240.1    Uniprot ID   B2USG5
Organism   Helicobacter pylori Shi470     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 326314..336718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH_RS01610 (HPSH_01705) - 326494..327432 (-) 939 WP_000833957.1 tetraacyldisaccharide 4'-kinase -
  HPSH_RS01615 (HPSH_01710) - 327429..328211 (-) 783 WP_001168228.1 NAD+ synthase -
  HPSH_RS01625 (HPSH_01715) ilvC 328458..329450 (+) 993 WP_001207745.1 ketol-acid reductoisomerase -
  HPSH_RS01630 (HPSH_01720) minD 329469..330275 (+) 807 WP_001019024.1 septum site-determining protein MinD -
  HPSH_RS01635 (HPSH_01725) minE 330272..330505 (+) 234 WP_000051411.1 cell division topological specificity factor MinE -
  HPSH_RS01640 (HPSH_01730) dprA 330517..331317 (+) 801 WP_000841131.1 DNA-processing protein DprA Machinery gene
  HPSH_RS01645 (HPSH_01735) dprB 331314..331718 (+) 405 WP_000599240.1 Holliday junction resolvase RuvX Machinery gene
  HPSH_RS01650 (HPSH_01745) - 331849..332319 (+) 471 WP_012443302.1 tetratricopeptide repeat protein -
  HPSH_RS01655 (HPSH_01750) - 332509..332847 (+) 339 WP_000699918.1 hypothetical protein -
  HPSH_RS01660 (HPSH_01755) - 332831..333397 (+) 567 WP_000037139.1 hypothetical protein -
  HPSH_RS07895 (HPSH_01760) - 333409..333657 (+) 249 WP_012443303.1 glycoside hydrolase family protein -
  HPSH_RS08490 (HPSH_01765) - 333663..334040 (+) 378 WP_012443304.1 hypothetical protein -
  HPSH_RS01680 (HPSH_01780) - 334402..334773 (+) 372 WP_411155703.1 DUF1294 domain-containing protein -
  HPSH_RS01685 (HPSH_01785) - 334789..335574 (+) 786 WP_000458572.1 hypothetical protein -
  HPSH_RS01690 (HPSH_01790) - 335564..336646 (+) 1083 WP_000426632.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15149.63 Da        Isoelectric Point: 9.1727

>NTDB_id=30916 HPSH_RS01645 WP_000599240.1 331314..331718(+) (dprB) [Helicobacter pylori Shi470]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLNDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACGILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=30916 HPSH_RS01645 WP_000599240.1 331314..331718(+) (dprB) [Helicobacter pylori Shi470]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGTGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAACGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGTGCTTGTGGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2USG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.737

99.254

0.94

Multiple sequence alignment