Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   E1J56_RS09010 Genome accession   NZ_CP037910
Coordinates   1886095..1886751 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain YSP8-1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1881095..1891751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1J56_RS08980 dcyD 1881975..1882961 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  E1J56_RS08985 tcyL 1882976..1883644 (+) 669 WP_096001828.1 cystine ABC transporter permease -
  E1J56_RS08990 tcyN 1883641..1884393 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  E1J56_RS08995 sdiA 1884623..1885345 (+) 723 WP_001154267.1 transcriptional regulator SdiA -
  E1J56_RS09000 yecF 1885412..1885636 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  E1J56_RS09005 yecU 1885623..1885799 (-) 177 WP_000590347.1 protein YecU -
  E1J56_RS26480 - 1885882..1885953 (-) 72 Protein_1767 transcriptional regulator -
  E1J56_RS09010 letA 1886095..1886751 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  E1J56_RS09015 uvrC 1886748..1888580 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  E1J56_RS09020 pgsA 1888637..1889185 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  E1J56_RS09040 yecA 1889835..1890500 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=308678 E1J56_RS09010 WP_000611335.1 1886095..1886751(+) (letA) [Escherichia coli strain YSP8-1]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=308678 E1J56_RS09010 WP_000611335.1 1886095..1886751(+) (letA) [Escherichia coli strain YSP8-1]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486