Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   NT05HA_RS10395 Genome accession   NC_012913
Coordinates   2183821..2184624 (-) Length   267 a.a.
NCBI ID   WP_005701812.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus NJ8700     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2178821..2189624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT05HA_RS10365 (NT05HA_2229) aroB 2179080..2180168 (-) 1089 WP_005701818.1 3-dehydroquinate synthase -
  NT05HA_RS10370 (NT05HA_2230) aroK 2180189..2180716 (-) 528 WP_005701817.1 shikimate kinase AroK -
  NT05HA_RS10375 (NT05HA_2231) comE 2180930..2182354 (-) 1425 WP_012771965.1 type IV pilus secretin PilQ Machinery gene
  NT05HA_RS10380 (NT05HA_2232) - 2182364..2182759 (-) 396 WP_005701815.1 hypothetical protein -
  NT05HA_RS10385 (NT05HA_2233) - 2182759..2183292 (-) 534 WP_005701814.1 competence protein -
  NT05HA_RS10390 (NT05HA_2234) - 2183289..2183807 (-) 519 WP_005701813.1 PilN domain-containing protein -
  NT05HA_RS10395 (NT05HA_2235) comA 2183821..2184624 (-) 804 WP_005701812.1 hypothetical protein Machinery gene
  NT05HA_RS10400 (NT05HA_2236) - 2184751..2187311 (+) 2561 Protein_2015 penicillin-binding protein 1A -
  NT05HA_RS10405 (NT05HA_2238) - 2187418..2188263 (+) 846 WP_005701808.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31296.77 Da        Isoelectric Point: 6.4938

>NTDB_id=30859 NT05HA_RS10395 WP_005701812.1 2183821..2184624(-) (comA) [Aggregatibacter aphrophilus NJ8700]
MFIKHTPSIQIGLWYHNQNVDLVWFDKQNQAQCLHLDDIDLLDLPSALNRHSNYLRRSASYKYITSIMPHQIWQKTLILP
HNLTPAECEQQCHFTLTNELPIPINEIWYDYAATPLKQGFRLEIFAIRQQIAKDYLHQFAPLQIDVLDNTAKAILRATEY
VLGKPFPANAVLLYQDALGALAVQHKLQQTQTLFQTDKNLTALLAQYCQRYDEQPEQIFYYQMVRNDSVVPKHWRPVETH
LPLIALGNALWQQEIHKEDDELFRSFS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=30859 NT05HA_RS10395 WP_005701812.1 2183821..2184624(-) (comA) [Aggregatibacter aphrophilus NJ8700]
ATGTTCATAAAACATACACCTTCTATTCAAATTGGCCTGTGGTATCACAACCAAAATGTGGATCTCGTGTGGTTCGACAA
GCAAAACCAAGCACAATGTTTACATCTCGACGACATAGATCTGCTGGATTTACCCAGCGCCTTAAATCGTCACTCAAATT
ATTTACGCAGAAGTGCATCGTATAAATACATAACATCTATCATGCCACACCAAATTTGGCAGAAAACATTAATTCTGCCG
CATAATCTCACGCCGGCGGAATGTGAACAACAATGTCATTTCACCTTAACCAACGAGCTACCGATTCCCATTAATGAAAT
TTGGTATGACTACGCTGCCACGCCGTTAAAACAAGGTTTTCGGCTAGAGATTTTTGCCATTAGACAACAAATCGCGAAAG
ATTATTTACATCAATTTGCGCCTTTACAAATTGACGTGTTGGACAACACCGCCAAGGCGATATTGCGTGCAACGGAATAT
GTACTGGGCAAACCGTTCCCGGCAAACGCCGTGTTGTTATATCAGGACGCACTAGGTGCATTGGCGGTGCAACATAAATT
GCAGCAAACCCAAACTTTATTCCAAACGGACAAAAATTTGACCGCACTTTTAGCACAATATTGCCAACGTTATGACGAAC
AGCCGGAACAGATTTTCTATTATCAAATGGTCCGAAATGATTCTGTGGTCCCAAAACATTGGCGCCCGGTGGAAACCCAT
TTGCCGTTAATTGCGCTCGGCAATGCCTTATGGCAACAAGAAATACATAAAGAAGATGATGAACTTTTTCGTTCGTTTTC
TTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

40.53

98.876

0.401
  comA Haemophilus influenzae Rd KW20

40.31

96.629

0.39

Multiple sequence alignment