Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   E1J55_RS05830 Genome accession   NZ_CP037903
Coordinates   1184359..1185096 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain LHM10-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1179359..1190096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1J55_RS05800 yfiL 1179518..1179883 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  E1J55_RS05805 aroF 1180092..1181162 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  E1J55_RS05810 tyrA 1181173..1182294 (+) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  E1J55_RS05815 pheA 1182337..1183497 (-) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  E1J55_RS05820 pheL 1183596..1183643 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  E1J55_RS05825 raiA 1183747..1184088 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  E1J55_RS05830 comL 1184359..1185096 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  E1J55_RS05835 rluD 1185231..1186211 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  E1J55_RS05840 yfiH 1186208..1186939 (+) 732 WP_000040128.1 purine nucleoside phosphorylase YfiH -
  E1J55_RS05845 clpC 1187069..1189642 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=308587 E1J55_RS05830 WP_000197686.1 1184359..1185096(-) (comL) [Escherichia coli strain LHM10-1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=308587 E1J55_RS05830 WP_000197686.1 1184359..1185096(-) (comL) [Escherichia coli strain LHM10-1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTTATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376