Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   EZV63_RS19865 Genome accession   NZ_CP036534
Coordinates   4447246..4448655 (-) Length   469 a.a.
NCBI ID   WP_166624602.1    Uniprot ID   -
Organism   Streptomyces sp. VN1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4442246..4453655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZV63_RS19845 (EZV63_20110) - 4443501..4444181 (+) 681 WP_166624599.1 response regulator transcription factor -
  EZV63_RS19850 (EZV63_20115) - 4444286..4444936 (-) 651 WP_194963031.1 phosphatase PAP2 family protein -
  EZV63_RS19855 - 4445122..4445988 (+) 867 WP_166624601.1 hypothetical protein -
  EZV63_RS19860 (EZV63_20130) disA 4446040..4447164 (-) 1125 WP_031047520.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  EZV63_RS19865 (EZV63_20135) radA/sms 4447246..4448655 (-) 1410 WP_166624602.1 DNA repair protein RadA Machinery gene
  EZV63_RS19870 (EZV63_20140) - 4448965..4450776 (+) 1812 WP_228773771.1 hypothetical protein -
  EZV63_RS19875 (EZV63_20145) - 4450873..4451715 (-) 843 WP_031047530.1 hypothetical protein -
  EZV63_RS19880 (EZV63_20150) - 4451788..4452720 (+) 933 WP_166624604.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49860.99 Da        Isoelectric Point: 7.4635

>NTDB_id=308361 EZV63_RS19865 WP_166624602.1 4447246..4448655(-) (radA/sms) [Streptomyces sp. VN1]
MAARTKSTKERPSFRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTTSALPIGEVDGRQATARPTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGRVPDGMKVLEVADIGDALRVLPRSRRREAPREEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=308361 EZV63_RS19865 WP_166624602.1 4447246..4448655(-) (radA/sms) [Streptomyces sp. VN1]
ATGGCTGCCCGTACGAAGTCCACCAAGGAACGGCCGTCCTTCCGCTGCACCGAGTGCGGCTGGCAGACGGCAAAATGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCCGTCCGTACGACGGCTCCGGGAC
GGGTCACCACCTCCGCGCTGCCCATCGGCGAGGTCGACGGACGGCAGGCGACCGCCCGCCCGACCGGCGTGCCGGAGCTG
GACCGGGTGCTCGGCGGCGGTCTGGTGCCCGGCGCCGTGGTGCTGCTCGCGGGTGAGCCGGGCGTCGGCAAGTCCACCCT
GCTGCTCGACGTGGCCGCCAAGTCGGCGAGCGACGAGCACCGCACGCTCTACGTCACCGGTGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGCGCCGACCGGATCAAGGCCATCGACGACCATCTGTACCTGGCGGCCGAGACCGACCTCGCGGCGGTGCTC
GGGCACCTGGACGCCGTGAAGCCGTCGCTGCTGATCCTCGACTCCGTACAGACGGTGGCCTCGCCCGAGATCGACGGCGC
CCCGGGCGGCATGGCGCAGGTGCGGGAGGTGGCGGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGTCCACGCTGC
TCGTGGGCCACGTCACCAAGGACGGTGCCATCGCCGGACCCCGGCTCCTGGAGCACCTCGTCGACGTCGTACTGCACTTC
GAGGGCGACCGGCACGCGCGGCTGCGGCTCGTGCGGGGCGTCAAGAACCGGTACGGCACGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTGGCCGACCCCAGCGGACTGTTCCTCACCCGGCGTGCCGAGCCCGTGCCCG
GCACCTGTCTGACCGTCACCCTGGAGGGACGCCGGCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTCGACTCGCAGATC
CCCTCTCCCCGGCGCACGACCTCCGGTCTGGAGACGTCGCGCGTCTCGATGATGCTGGCGGTCCTCGAGCAGCGCGGCCG
CATCAGCGCCCTGGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGGGTGAAGCTCTCCGAGCCGGCCGCCGACCTCG
CCATCGCGCTCGCCCTGGCGAGTGCCGCCAGCGACACCCCGCTGCCCAAGAACCTCGTCGCGATCGGCGAGGTCGGTCTC
GCCGGAGAGGTGAGACGGGTCACGGGCGTGCAGCGCAGACTCTCCGAGGCACACCGCCTTGGCTTCACACACGCCCTGGT
ACCGAGCGATCCGGGGCGGGTCCCGGACGGCATGAAGGTCCTGGAAGTCGCGGACATAGGGGACGCCCTGCGGGTGCTTC
CGCGCTCGCGTCGGCGAGAGGCCCCACGGGAGGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.375

0.42
  radA Streptococcus mitis NCTC 12261

43.363

96.375

0.418
  radA Streptococcus pneumoniae R6

43.43

95.736

0.416
  radA Streptococcus pneumoniae Rx1

43.43

95.736

0.416
  radA Streptococcus pneumoniae TIGR4

43.43

95.736

0.416
  radA Streptococcus pneumoniae D39

43.43

95.736

0.416
  radA Streptococcus mitis SK321

44.706

90.618

0.405