Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EZV63_RS18720 Genome accession   NZ_CP036534
Coordinates   4204460..4205059 (+) Length   199 a.a.
NCBI ID   WP_031047069.1    Uniprot ID   A0ABS7W0U1
Organism   Streptomyces sp. VN1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4199460..4210059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZV63_RS18700 (EZV63_18950) - 4199494..4200849 (-) 1356 WP_166624536.1 aspartate aminotransferase family protein -
  EZV63_RS18705 (EZV63_18955) - 4201066..4202690 (+) 1625 Protein_3634 serine/threonine-protein kinase -
  EZV63_RS18710 (EZV63_18960) - 4202923..4203750 (-) 828 WP_037766266.1 SLATT domain-containing protein -
  EZV63_RS18715 (EZV63_18965) - 4204021..4204368 (+) 348 WP_078535889.1 YbaB/EbfC family nucleoid-associated protein -
  EZV63_RS18720 (EZV63_18970) recR 4204460..4205059 (+) 600 WP_031047069.1 recombination mediator RecR Machinery gene
  EZV63_RS18725 (EZV63_18975) - 4205052..4205711 (+) 660 WP_037766264.1 DUF5063 domain-containing protein -
  EZV63_RS18730 (EZV63_18980) - 4205846..4207072 (+) 1227 WP_037766262.1 cytochrome P450 -
  EZV63_RS18735 (EZV63_18985) - 4207198..4208460 (-) 1263 WP_166624537.1 cytochrome P450 -
  EZV63_RS18740 (EZV63_18990) - 4208472..4209104 (-) 633 WP_037766260.1 ATP/GTP-binding protein -
  EZV63_RS18745 (EZV63_18995) - 4209085..4209441 (-) 357 WP_031047058.1 DUF742 domain-containing protein -
  EZV63_RS18750 (EZV63_19000) - 4209438..4209857 (-) 420 WP_031047057.1 roadblock/LC7 domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21734.07 Da        Isoelectric Point: 4.9848

>NTDB_id=308355 EZV63_RS18720 WP_031047069.1 4204460..4205059(+) (recR) [Streptomyces sp. VN1]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHVLQAEPTDVRRLAQALMEVKAKVRFCATCGNVAQEEQCAICRDPRRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIDGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=308355 EZV63_RS18720 WP_031047069.1 4204460..4205059(+) (recR) [Streptomyces sp. VN1]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACGTCCTGCAGGCCGAGCCGACCGACGTACGGCGGCTCGCCCAGGCCCTCATGGAAGTGAAGGCCAAGGTCC
GCTTCTGCGCGACCTGTGGAAACGTCGCGCAGGAGGAGCAGTGCGCCATCTGCCGCGACCCGCGCCGCGACCCCGCGGTG
ATCTGCGTGGTGGAGGAGCCCAAGGACGTCGTCGCCATCGAGCGCACCCGTGAGTTCCGCGGGCGGTACCACGTGCTCGG
CGGTGCGATCAGCCCGATCGACGGGGTCGGCCCCGACGATCTCCGCATCCGTGAGCTGCTCGCCCGCCTGGCGGACGGCA
CGGTCACGGAACTGATCCTGGCCACGGACCCGAACCTGGAGGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457

Multiple sequence alignment