Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   EZV63_RS11450 Genome accession   NZ_CP036534
Coordinates   2624833..2625558 (-) Length   241 a.a.
NCBI ID   WP_166624084.1    Uniprot ID   -
Organism   Streptomyces sp. VN1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2619833..2630558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZV63_RS11430 (EZV63_11555) - 2620711..2621766 (+) 1056 WP_224327318.1 ABC transporter ATP-binding protein -
  EZV63_RS11435 (EZV63_11560) - 2621797..2622498 (-) 702 WP_031040209.1 hypothetical protein -
  EZV63_RS11440 (EZV63_11565) - 2622495..2622905 (-) 411 WP_070388104.1 thioesterase family protein -
  EZV63_RS11445 (EZV63_11570) ettA 2622908..2624572 (-) 1665 WP_037767158.1 energy-dependent translational throttle protein EttA -
  EZV63_RS11450 (EZV63_11575) vraR 2624833..2625558 (-) 726 WP_166624084.1 response regulator transcription factor Regulator
  EZV63_RS11455 (EZV63_11580) - 2625555..2626844 (-) 1290 WP_051159699.1 histidine kinase -
  EZV63_RS11460 (EZV63_11585) - 2627041..2628780 (+) 1740 WP_228773731.1 hypothetical protein -
  EZV63_RS11465 (EZV63_11590) - 2628777..2629223 (+) 447 WP_070388122.1 hypothetical protein -
  EZV63_RS11470 (EZV63_11595) - 2629400..2630554 (+) 1155 WP_078892393.1 hypothetical protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 25989.74 Da        Isoelectric Point: 7.5930

>NTDB_id=308340 EZV63_RS11450 WP_166624084.1 2624833..2625558(-) (vraR) [Streptomyces sp. VN1]
MSLRILLADDHAMFRSGLRAVLGTQDDLSCVAEVADGQAAVEETARLRPDVAILDIRMPRLDGLSAAERILAAPDNTTKV
IVLTTYDEDSYVYRALHMGASGFLLKSAPAEDTIAAVHIAARGDALIDPSVTRRLIARFAGSIAPPAPPTELERLTAREN
DVLLLLAQAHSNTEIARHLGIGDETVKTHVSRILAKLHLRDRTQAVVYAVSHRLVSPSVTARPPGKETAGPHGGRNPRPF
R

Nucleotide


Download         Length: 726 bp        

>NTDB_id=308340 EZV63_RS11450 WP_166624084.1 2624833..2625558(-) (vraR) [Streptomyces sp. VN1]
ATGAGTCTGCGTATCCTCCTGGCCGACGACCACGCCATGTTCCGCTCGGGACTCCGGGCCGTGCTCGGCACCCAGGACGA
CCTGTCCTGCGTCGCCGAGGTGGCCGACGGTCAGGCGGCCGTCGAGGAGACCGCCAGGCTGAGGCCCGACGTCGCCATCC
TGGACATCCGCATGCCGCGCCTGGACGGACTCAGCGCGGCGGAACGCATCCTGGCGGCACCGGACAACACCACGAAGGTC
ATCGTGCTCACCACCTACGACGAGGACAGCTACGTCTACCGCGCCCTGCACATGGGGGCCAGCGGGTTCCTCCTCAAGAG
CGCCCCGGCGGAGGACACCATCGCCGCCGTCCACATCGCCGCCCGGGGCGACGCCCTGATCGACCCCTCGGTCACGCGCC
GCCTGATCGCCCGCTTCGCCGGCAGCATCGCCCCGCCCGCCCCACCCACCGAACTGGAGCGGCTGACGGCCCGCGAGAAC
GACGTACTGCTCCTCCTGGCGCAGGCACACAGCAACACGGAGATCGCGCGGCACCTGGGCATCGGCGACGAGACGGTCAA
GACCCACGTCTCCCGGATCCTGGCCAAGCTCCATCTGCGCGACCGCACCCAGGCCGTCGTGTACGCGGTCTCCCACCGAC
TCGTCTCCCCGTCCGTCACCGCCCGCCCGCCCGGGAAGGAGACAGCGGGCCCGCACGGCGGAAGGAACCCCCGGCCCTTC
CGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.367

90.456

0.365
  degU Bacillus subtilis subsp. subtilis str. 168

38.326

94.191

0.361