Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   EZV63_RS07120 Genome accession   NZ_CP036534
Coordinates   1628572..1629213 (-) Length   213 a.a.
NCBI ID   WP_031047596.1    Uniprot ID   A0ABS7WAB0
Organism   Streptomyces sp. VN1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1623572..1634213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZV63_RS07090 (EZV63_07185) - 1623915..1624421 (+) 507 WP_031047582.1 HNH endonuclease -
  EZV63_RS07095 (EZV63_07190) - 1624573..1625514 (-) 942 WP_031047585.1 SPFH domain-containing protein -
  EZV63_RS07100 (EZV63_07195) - 1625763..1626194 (-) 432 WP_070387730.1 NfeD family protein -
  EZV63_RS07105 (EZV63_07200) - 1626249..1627046 (-) 798 WP_037770609.1 ABC transporter ATP-binding protein -
  EZV63_RS07110 (EZV63_07205) - 1627200..1627982 (+) 783 WP_166623812.1 hypothetical protein -
  EZV63_RS07115 (EZV63_07210) chpE 1628137..1628385 (-) 249 WP_031047593.1 chaplin ChpE -
  EZV63_RS07120 (EZV63_07215) vraR 1628572..1629213 (-) 642 WP_031047596.1 response regulator transcription factor Regulator
  EZV63_RS07125 (EZV63_07220) - 1629206..1630384 (-) 1179 WP_166623813.1 GAF domain-containing sensor histidine kinase -
  EZV63_RS07130 (EZV63_07225) - 1630617..1631312 (+) 696 WP_070387731.1 SDR family oxidoreductase -
  EZV63_RS07135 (EZV63_07230) - 1631309..1632502 (+) 1194 WP_070387732.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  EZV63_RS07140 (EZV63_07235) - 1632881..1633579 (+) 699 WP_166623814.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22995.20 Da        Isoelectric Point: 4.9938

>NTDB_id=308328 EZV63_RS07120 WP_031047596.1 1628572..1629213(-) (vraR) [Streptomyces sp. VN1]
MADPIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVDRAQELRPDVILMDVKMPGMDGVDALRRLRELDNDAR
VLVVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEESNSGPGRAGSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGVAG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=308328 EZV63_RS07120 WP_031047596.1 1628572..1629213(-) (vraR) [Streptomyces sp. VN1]
GTGGCTGACCCGATCAAGGTGCTGCTCGTCGACGACCACCAAGTGGTCCGCCGGGGGCTGCGCACCTTCCTGGAGGTGCA
GGACGACATCGAGGTCGTAGGCGAGGCCGCGGACGGCGCCGAGGGCGTCGACCGCGCCCAGGAACTGAGGCCCGACGTGA
TCCTCATGGACGTCAAGATGCCGGGCATGGACGGCGTCGACGCCCTCCGCAGGCTCCGCGAGCTGGACAACGACGCGCGC
GTGCTGGTGGTGACCAGCTTCACCGAGCAGCGCACCGTGGTCCCGGCCCTGCGCGCGGGTGCCGCCGGCTACGTCTACAA
GGACGTCGACCCCGACGCGCTCGCGGGCGCCATCCGCTCCGTCCACGCCGGCCACATCCTGCTCCAGCCCGAGGTCGCGG
GCGCCCTCCTGAGCCAGGAGGAGAGCAACTCCGGCCCCGGCAGAGCGGGTTCCCTCACGGAACGGGAGCGAGAGGTGCTG
GGCCTGATAGCGGACGGCCGCTCCAACCGGGAGATCGCCCGCGCGCTGGTGCTGTCCGAGAAGACCGTGAAGACCCACGT
CTCGAACATCCTGATGAAACTCGACCTGGCGGACCGCACCCAGGCCGCCCTGTGGGCCGTACGCCACGGCGTGGCCGGCT
GA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.667

98.592

0.46
  degU Bacillus subtilis subsp. subtilis str. 168

37.104

100

0.385