Detailed information NTG0030823

Bioinformatically predicted

Overview

• Name: rpoN/rpoN1
• Type: Machinery gene
• Locus tag: BAV_RS16680
• Genome accession: NC_010645
• Coordinates: 3635225..3636646 (-)
• Length: 473 a.a.
• NCBI ID: WP_012418986.1
• Uniprot ID: Q2KTQ1
• Organism: Bordetella avium 197N
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3630225..3641646

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAV_RS16655 (BAV3344)	-	3630847..3631476 (+)	630	WP_012418981.1	LysE family transporter	-
BAV_RS16660 (BAV3345)	-	3631502..3633109 (+)	1608	WP_012418982.1	peptide chain release factor 3	-
BAV_RS16665 (BAV3346)	-	3633146..3633811 (+)	666	WP_012418983.1	hypothetical protein	-
BAV_RS16670 (BAV3347)	bfr	3633884..3634360 (-)	477	WP_012418984.1	bacterioferritin	-
BAV_RS16675 (BAV3348)	-	3634868..3635164 (+)	297	WP_012418985.1	bacterioferritin-associated ferredoxin	-
BAV_RS16680 (BAV3349)	rpoN/rpoN1	3635225..3636646 (-)	1422	WP_012418986.1	RNA polymerase factor sigma-54	Machinery gene
BAV_RS16685 (BAV3350)	-	3636645..3637280 (+)	636	WP_012418987.1	hypothetical protein	-
BAV_RS16690 (BAV3351)	leuA	3637637..3639346 (+)	1710	WP_012418988.1	2-isopropylmalate synthase	-
BAV_RS16695 (BAV3352)	-	3639426..3640715 (-)	1290	WP_012418989.1	amidase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 52235.68 Da
• Isoelectric Point: 4.8623

>NTDB_id=30823 BAV_RS16680 WP_012418986.1 3635225..3636646(-) (rpoN/rpoN1) [Bordetella avium 197N]
MQNIVPMTRPALELRPGQHLTLTPQLQQSIRLLQLSSLELEAEISQALADNPLLERDENPAEQVDSQREASIESDDSSPE
IETRLEEMPGSGGVYPDEDEPQQARADTLREHLLGQLALTRAGPRDAALVEVLIEELDDNGYLGSPLVEILQWLPPELEI
DEDELRVALSLLQSFDPPGIGARDMADCLLLQLRQPDLTRLPEAANPVILRCAREICVQHLSLLASGNLARLRDVLGVDE
PTLRAAHSLIVRLEPRPGRAWTVPAAEYALPDVLVRKTRQGWQAVLNSAAMPRLQINGLYAQMLANQRETAYAGLSAQLQ
QARWMIRNIEQRFDTILRVSQAIVVHQAAFFSEGPAAMRPLILKDIAAELGLHESTISRATTQKYMLTPFGTLELKYFFG
TGLATDSGNAASATAVQAHIRKMVSEENRAKPLSDSQIMERLASQGIVIARRTVAKYREALRIAPAAVRKAQG

Nucleotide

• Length: 1422 bp

>NTDB_id=30823 BAV_RS16680 WP_012418986.1 3635225..3636646(-) (rpoN/rpoN1) [Bordetella avium 197N]
ATGCAAAATATTGTACCTATGACTCGTCCTGCTCTAGAACTTCGGCCTGGTCAGCATTTAACTTTGACCCCGCAACTGCA
ACAGTCGATCCGGCTCTTGCAGCTATCCTCATTGGAGCTGGAGGCGGAAATCTCCCAGGCCTTGGCCGACAATCCGTTGC
TGGAGCGCGACGAAAATCCGGCCGAACAGGTGGACTCGCAGCGCGAGGCAAGCATCGAAAGTGATGATTCCTCACCTGAA
ATCGAGACGCGTCTGGAAGAAATGCCGGGTTCGGGCGGCGTCTATCCAGACGAAGATGAGCCGCAACAGGCCCGCGCCGA
CACGCTGCGTGAGCATTTGCTGGGCCAACTGGCGCTGACCCGCGCCGGGCCGCGCGACGCGGCATTGGTTGAGGTGCTCA
TCGAGGAGCTGGACGACAACGGCTATCTGGGCTCGCCGCTGGTGGAAATCTTGCAGTGGCTGCCGCCGGAGCTGGAGATC
GATGAAGACGAGTTGCGTGTCGCCTTGAGCCTGTTGCAGTCTTTCGACCCGCCGGGCATCGGCGCCCGCGATATGGCGGA
CTGTCTGTTGCTGCAATTGCGCCAACCCGATCTGACTCGTTTGCCCGAAGCCGCCAACCCTGTCATCTTGCGTTGTGCGC
GCGAGATCTGCGTGCAGCATCTGTCCTTGCTGGCCTCAGGCAATTTGGCGCGCCTGCGTGACGTGCTGGGGGTGGACGAA
CCGACCTTGCGCGCCGCCCACAGCCTTATCGTGCGCCTAGAGCCCCGACCCGGTCGGGCCTGGACCGTCCCGGCGGCCGA
GTATGCGCTGCCTGACGTGCTGGTGCGCAAAACGCGGCAGGGCTGGCAGGCCGTGCTCAATAGCGCCGCCATGCCCCGGC
TACAGATCAATGGGTTGTATGCGCAAATGTTGGCTAACCAGCGAGAAACGGCCTATGCGGGCCTGAGCGCACAGTTGCAG
CAGGCACGCTGGATGATCCGCAATATCGAACAACGATTCGACACGATTCTGCGCGTGTCGCAGGCCATTGTGGTGCATCA
GGCGGCGTTTTTCAGTGAAGGTCCGGCTGCCATGCGTCCGCTCATTCTCAAAGACATTGCAGCTGAGTTGGGTTTGCACG
AATCCACGATTTCACGCGCCACAACACAGAAGTACATGCTCACTCCGTTCGGTACGCTGGAGCTCAAATATTTCTTCGGG
ACCGGTCTTGCCACGGATAGCGGGAATGCGGCTTCTGCCACCGCTGTGCAGGCGCATATCCGCAAGATGGTGTCAGAGGA
AAACCGCGCCAAGCCGCTATCTGATAGCCAGATCATGGAGCGATTGGCCAGTCAGGGCATCGTGATTGCCCGGCGTACCG
TGGCCAAGTACCGGGAAGCCTTGCGCATTGCGCCGGCGGCAGTGCGTAAGGCGCAGGGCTGA

Domains

Predicted by InterproScan.

• Sigma-54, DNA binding domain (Sigma54_DBD) (315-470)

• Sigma-54 factor, core binding domain (Sigma54_CBD) (101-300)

• Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID) (12-55)

3D structure

• AlphaFold DB: Q2KTQ1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoN/rpoN1	Ralstonia pseudosolanacearum GMI1000	49.507	100	0.531