Detailed information NTG0308219

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: EZY40_RS08460
• Genome accession: NZ_CP036530
• Coordinates: 1726447..1727553 (+)
• Length: 368 a.a.
• NCBI ID: WP_011185108.1
• Uniprot ID: Q5X9A5
• Organism: Streptococcus pyogenes strain STAB09023
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1721447..1732553

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EZY40_RS08435 (EZY40_08590)	pgsA	1721556..1722098 (-)	543	WP_002991432.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
EZY40_RS08440 (EZY40_08595)	-	1722112..1723137 (-)	1026	WP_011285332.1	helix-turn-helix domain-containing protein	-
EZY40_RS08445 (EZY40_08600)	yfmH	1723187..1724476 (-)	1290	WP_002991436.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
EZY40_RS08450 (EZY40_08605)	yfmF	1724478..1725722 (-)	1245	WP_030127514.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
EZY40_RS08455 (EZY40_08610)	yaaA	1726032..1726445 (+)	414	WP_011889257.1	S4 domain-containing protein YaaA	-
EZY40_RS08460 (EZY40_08615)	recF	1726447..1727553 (+)	1107	WP_011185108.1	DNA replication/repair protein RecF	Machinery gene
EZY40_RS08465 (EZY40_08620)	-	1727609..1728472 (-)	864	WP_002992310.1	GRP family sugar transporter	-
EZY40_RS08470 (EZY40_08625)	guaB	1728674..1730155 (-)	1482	WP_002991454.1	IMP dehydrogenase	-
EZY40_RS08475 (EZY40_08630)	trpS	1730463..1731485 (-)	1023	WP_002991455.1	tryptophan--tRNA ligase	-

Sequence

Protein

• Length: 368 a.a.
• Molecular weight: 41795.71 Da
• Isoelectric Point: 7.8294

>NTDB_id=308219 EZY40_RS08460 WP_011185108.1 1726447..1727553(+) (recF) [Streptococcus pyogenes strain STAB09023]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide

• Length: 1107 bp

>NTDB_id=308219 EZY40_RS08460 WP_011185108.1 1726447..1727553(+) (recF) [Streptococcus pyogenes strain STAB09023]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTGAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTGGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTCCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-360)

3D structure

• AlphaFold DB: Q5X9A5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	62.842	99.457	0.625
recF	Bacillus subtilis subsp. subtilis str. 168	45.722	100	0.465