Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EZZ25_RS03370 Genome accession   NZ_CP036499
Coordinates   701491..702165 (-) Length   224 a.a.
NCBI ID   WP_000053459.1    Uniprot ID   A0AAU8WKI7
Organism   Vibrio cholerae strain 20000     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 696491..707165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZZ25_RS03335 (EZZ25_03335) - 696670..697449 (+) 780 WP_000042990.1 glycosyltransferase family 2 protein -
  EZZ25_RS03340 (EZZ25_03340) - 697512..698549 (-) 1038 WP_069503507.1 glycosyltransferase family 9 protein -
  EZZ25_RS03345 (EZZ25_03345) coaD 698660..699154 (+) 495 WP_000078886.1 pantetheine-phosphate adenylyltransferase -
  EZZ25_RS03350 (EZZ25_03350) mutM 699251..700060 (-) 810 WP_046127234.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  EZZ25_RS03355 (EZZ25_03355) - 700070..700552 (-) 483 WP_001266250.1 hypothetical protein -
  EZZ25_RS03360 (EZZ25_03360) rpmG 700779..700946 (-) 168 WP_001051801.1 50S ribosomal protein L33 -
  EZZ25_RS03365 (EZZ25_03365) rpmB 700960..701196 (-) 237 WP_000091952.1 50S ribosomal protein L28 -
  EZZ25_RS03370 (EZZ25_03370) radC 701491..702165 (-) 675 WP_000053459.1 DNA repair protein RadC Machinery gene
  EZZ25_RS03375 (EZZ25_03375) - 702277..703956 (-) 1680 WP_000953041.1 methyl-accepting chemotaxis protein -
  EZZ25_RS03380 (EZZ25_03380) coaBC 704139..705338 (+) 1200 WP_001190960.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EZZ25_RS03385 (EZZ25_03385) - 705404..705541 (-) 138 WP_001889830.1 hypothetical protein -
  EZZ25_RS03390 (EZZ25_03390) slmA 705497..706087 (+) 591 WP_000918350.1 nucleoid occlusion factor SlmA -
  EZZ25_RS03395 (EZZ25_03395) - 706093..707040 (+) 948 WP_000076207.1 Kdo(2)-lipid IV(A) acyltransferase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25256.06 Da        Isoelectric Point: 7.5163

>NTDB_id=308071 EZZ25_RS03370 WP_000053459.1 701491..702165(-) (radC) [Vibrio cholerae strain 20000]
MSLKELPTESMPREKLLQRGPQSLSDAELLAIFLRTGTHGMNVLALADLLLRDFGSLRALFCASKEQFCRHKGLGEAKFV
QLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDRQREAFYILFLDNQHRVIRDEILFEGTIDAASVYPREVVKR
ALHHNAAAVILAHNHPSGVAEPSQADRRITDRLRDALGLVEIRVLDHFVVGDGEVVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=308071 EZZ25_RS03370 WP_000053459.1 701491..702165(-) (radC) [Vibrio cholerae strain 20000]
ATGAGTCTGAAAGAGTTACCCACCGAATCGATGCCGCGCGAAAAATTGCTGCAACGCGGCCCGCAATCATTAAGTGATGC
GGAATTGCTGGCGATTTTCCTACGTACAGGCACGCATGGTATGAATGTGCTCGCCTTGGCGGATCTGCTGCTGCGCGATT
TTGGATCGCTGCGCGCACTGTTTTGTGCCTCCAAGGAGCAGTTTTGTCGCCACAAAGGGTTGGGCGAAGCCAAATTTGTC
CAGTTACAAGCGGTATTGGAGATGACGCAGCGTTATCTCGCTGAAACCTTAAAGCGCGGTGATGCACTCACCAGTCCGCA
GCAAACCAAACTTTATTTATCGAGCGTGCTGCGCGATCGCCAACGAGAAGCCTTCTATATATTGTTTTTGGATAACCAAC
ATCGTGTCATTCGTGATGAGATTTTATTTGAAGGGACGATTGATGCGGCGAGCGTTTACCCGCGAGAAGTGGTTAAGCGG
GCGCTGCACCATAATGCCGCTGCGGTAATATTGGCACACAACCACCCATCGGGTGTTGCGGAACCGAGTCAAGCCGATCG
AAGGATCACCGATCGCCTGCGTGATGCACTCGGTTTGGTTGAGATTCGTGTGCTGGATCATTTTGTCGTCGGTGATGGGG
AAGTGGTCTCTTTTGCTGAACGCGGCTGGATATAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-79)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAU8WKI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.704

96.429

0.518
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.946

100

0.379

Multiple sequence alignment