Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EZZ25_RS00275 Genome accession   NZ_CP036499
Coordinates   54442..56106 (+) Length   554 a.a.
NCBI ID   WP_000879550.1    Uniprot ID   A0AAU8WIH4
Organism   Vibrio cholerae strain 20000     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 49442..61106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZZ25_RS00260 (EZZ25_00260) dnaK 50509..52416 (-) 1908 WP_000516147.1 molecular chaperone DnaK -
  EZZ25_RS19455 - 52574..52687 (+) 114 WP_228006377.1 transporter -
  EZZ25_RS00265 (EZZ25_00265) grpE 52680..53282 (-) 603 WP_000064037.1 nucleotide exchange factor GrpE -
  EZZ25_RS00270 (EZZ25_00270) nadK 53428..54312 (+) 885 WP_000742830.1 NAD(+) kinase -
  EZZ25_RS00275 (EZZ25_00275) recN 54442..56106 (+) 1665 WP_000879550.1 DNA repair protein RecN Machinery gene
  EZZ25_RS00280 (EZZ25_00280) bamE 56265..56624 (+) 360 WP_001160909.1 outer membrane protein assembly factor BamE -
  EZZ25_RS00285 (EZZ25_00285) - 56702..57007 (-) 306 WP_001918351.1 RnfH family protein -
  EZZ25_RS00290 (EZZ25_00290) - 57010..57444 (-) 435 WP_000815880.1 type II toxin-antitoxin system RatA family toxin -
  EZZ25_RS00295 (EZZ25_00295) smpB 57628..58113 (+) 486 WP_000162689.1 SsrA-binding protein SmpB -
  EZZ25_RS00305 (EZZ25_00305) - 58715..59941 (+) 1227 WP_001137980.1 integrase domain-containing protein -

Sequence

Protein


Download         Length: 554 a.a.        Molecular weight: 61245.97 Da        Isoelectric Point: 5.6762

>NTDB_id=308046 EZZ25_RS00275 WP_000879550.1 54442..56106(+) (recN) [Vibrio cholerae strain 20000]
MLAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRAEASMVRQGEDKTEVSAAFHLDNNLLASRWL
EDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQLKTLGQLLINVHGQHAHQQLMKPEYQLSMLDQYAGHADLLKATR
HAYQNWRQASNQLKQLRENSQQNQAQLQLLEYQIKELNELALGEDEFVELEQEHKRLANSGDLALNCQRAIELLNEGEEV
NALGLLQSVSHTLIDLAEMDSKLTALPSMVAEALIQLEETYHELRNYLDSIDVDPERMAYVEERYSKVMSLARKHHVLPE
ELYQHHQALLQQIAQLDCSDEKMSALASEVDVLYQTFVAAADKLHKSRVRYAKELDKLISQSMHELSMEKAQFKIEVLQD
SAHSSPLGFDAVTFLVSTNPGQPLQPIAKVASGGELSRMSLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKLLRKL
GESTQVLCVTHLPQVAGCGHHQLFVAKQTKAGKTETQMLKLDQEQRIAELARLLGGSQITESTLANAKELLIAA

Nucleotide


Download         Length: 1665 bp        

>NTDB_id=308046 EZZ25_RS00275 WP_000879550.1 54442..56106(+) (recN) [Vibrio cholerae strain 20000]
ATGCTGGCTCACTTAAGTATCAATAACTTCGCTATCGTAAAGTCACTACAACTCGAATTATCAAAAGGAATGACCACCAT
CACCGGTGAAACTGGTGCTGGTAAATCCATTGCGATTGATGCTTTAGGTTTATGCCTTGGTGGTCGAGCCGAAGCCAGCA
TGGTGCGTCAAGGTGAAGATAAAACCGAAGTCAGCGCCGCCTTTCATCTGGATAACAATCTGCTCGCAAGCCGTTGGTTA
GAAGATAATGAACTGCTTGAAGGCAAAGAGTGCATTCTGCGCCGAATCATCACCAAAGATGGGCGCTCTAAAGCCTTTAT
TAATGGCAGCCCAGTTCCGCTCTCTCAGCTCAAAACATTGGGGCAACTGCTGATCAATGTGCATGGTCAACACGCACATC
AGCAACTGATGAAACCGGAATATCAACTCAGCATGCTTGATCAATACGCAGGGCATGCAGACTTGCTCAAAGCCACGCGT
CACGCCTATCAAAATTGGCGTCAAGCGAGCAATCAGCTCAAACAGCTGCGCGAAAATAGCCAACAAAATCAGGCACAATT
ACAACTTTTAGAATACCAAATCAAAGAGCTCAACGAATTAGCTCTCGGTGAGGATGAGTTTGTCGAACTAGAACAAGAGC
ATAAACGCTTAGCCAATAGCGGCGATCTGGCACTCAACTGCCAACGCGCGATTGAACTGCTCAATGAAGGGGAAGAAGTA
AACGCCTTAGGCCTTTTACAAAGTGTTAGCCATACGCTGATTGATCTGGCTGAAATGGATAGCAAGCTGACAGCGCTCCC
TTCTATGGTGGCCGAAGCGCTGATCCAACTTGAAGAGACTTACCATGAACTGCGCAACTACTTGGATTCGATTGATGTCG
ACCCAGAACGCATGGCGTATGTAGAAGAGCGCTACTCCAAAGTCATGTCGCTCGCGCGTAAACATCATGTACTGCCAGAA
GAGCTGTATCAGCATCACCAAGCACTCTTGCAGCAAATTGCTCAGCTAGATTGTTCTGACGAGAAAATGTCAGCACTCGC
GAGTGAAGTCGACGTGCTCTACCAAACCTTTGTTGCGGCCGCTGACAAACTGCACAAATCTCGTGTTCGCTATGCCAAAG
AATTGGATAAATTGATTAGCCAAAGCATGCATGAGCTGAGCATGGAAAAAGCGCAATTCAAAATCGAAGTGCTGCAAGAC
AGCGCGCACTCATCGCCATTAGGTTTTGATGCCGTGACTTTCTTAGTCTCGACGAACCCGGGTCAACCGCTGCAACCCAT
CGCCAAAGTGGCCTCTGGTGGTGAACTGTCACGGATGTCATTGGCGATCCAAGTGATTACTGCGCAGAAAGTCGATACTC
CAAGCCTGATTTTTGATGAAGTTGACGTGGGTATTTCAGGGCCAACAGCAGCCGTAGTTGGCAAACTACTGCGCAAATTG
GGCGAGTCAACCCAAGTACTGTGTGTCACCCACTTACCGCAAGTGGCAGGTTGCGGACACCATCAACTGTTTGTCGCCAA
ACAGACCAAAGCAGGCAAAACCGAAACGCAAATGCTCAAACTGGATCAAGAACAGCGCATTGCTGAACTTGCACGCTTGC
TCGGAGGCAGCCAAATTACCGAATCCACGCTCGCGAATGCTAAAGAGCTATTAATCGCAGCCTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAU8WIH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

37.3

100

0.379
  recN Bacillus subtilis subsp. subtilis str. 168

35.192

100

0.365

Multiple sequence alignment